Cyclopterus lumpus (lumpfish): 117743113
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Entry
117743113 CDS
T09199
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117743113 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117743113 (nup98)
03036 Chromosome and associated proteins [BR:
clum03036
]
117743113 (nup98)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117743113 (nup98)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117743113 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
117743113
NCBI-ProteinID:
XP_034406776
Ensembl:
ENSCLMG00005004760
LinkDB
All DBs
Position
14:complement(1072040..1091937)
Genome browser
AA seq
1828 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGTSSTFGQPRPADTAFGATGGFGTSAFGATANTGGLFGPAQNK
PGGLFGSSTFTQPAAPATNTGFGFGAATGTATSLFGNTGTGASSGLFSQPSNAFGAQKPT
TFGKVSLPSCPPGFGTSTTSGGLFGSTNTASNPFGGGGVASLFGGSGFTAAQQQPGTTVK
FNPPTGTDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMAAPT
GSLFGAAAAPPTAATGLFGAAAPNTNFSFGQNKTTFGAAPAAGGFGAAAGGLFGQPAAQP
ASSLFKPFGQTTTAPSTGFSFGNTNTMGQANTSTMGLFGNTAAPQAGGLFGAAQPSTAAG
FGAATGLFGQTNAGFGNVGAQQSLFGNKAAGFGTTTTSAAPSFGTGTGLFGNKPALTLGA
GANTSTFGFGANPAAGSLFGTKPAAGGLGTALGTSFGAAVGTGQASLFGNNQSKLGATLG
TMGTFGATAFNTGASTLGFGAPQQPIALTDPSGMASQQALLQQQLSVLAYSPYGESPLFR
NPLTDPKKKEERLKPTNPTAQKALTTPTHYKLTPRPATRVRPKALSASASKSQLFDGLDD
DEPSLTNGAFVPRKSIKKLVLKNLNSSQYNSPINKETDDLASPPEYPQNGHSHMEEEERL
PGPSGRVDDDPEVTQFYVNPIAKPVPQGRVQASLQDTISDLNMHKPARNGGLELSSEDMM
ASPGDESLQEDQEEEEEEEQQEIQQSPHPAGIVLNRVGYYTIPSLDDLSEMVDENGACVV
DNFTVGRKGYGSIFFPGEVSVTALNIDEIVHFRRKEVIVYPDDKNKPLEGEGLNRRAEVT
LDGVWPNDKTACTQIRSPERLTEMNYEGRLEKASRKQGARFLEYRAETGSWVFEVAHFSK
YGLQDSDEEEDVPLKADPKKLKTMSSLPARLQLPPSQQQVAPQAQPDAVELPGGVAELDS
DMADITQSFPTESMLGGGDDDDLPACDLDWTNGKLGGLIPAENDGVSASGRMASSLGINP
HTLQIMKASLFAEDEEESDMIQDQRVMKVDVSSPRIVVPGAQSRPSVGGLLQARFTSGLF
SQLSDSPRPPPLPRGSPGPPSFLLPPRTPELSVRTVGVRRLGGPVALKESVTMGKGGLLM
DAGLFAGRSFRVGWGPGWTLAHCGQRLGSPAAKRPDRHERTITDFSFLPKPARSKPLIES
PYKVVLEQLAGLDPPVKTGEEQQSQAVLQRPLEICLKHCTVDTSDASACPLVRPQPGVAA
LHEYAEWIVELSGERGDADPLLGYWSEVWTLCEALWGRMGPAHLEPDAEPPGAYEQQLER
RRTFSAWLSRGAARRVEEEVALATKGRHADAVFSYLTGNRVSEACRLAQKEGDHRLSLLL
SQAAGSQYCRDLLALQLTDWNRMQTDSYLPEERLRIFTLLSGKPVWQSSDSVVNVCSELD
WKRCVAVHLWFMLPPTASVADALARYEAAFQGSCEGGKYACAPLPAYLEAEQADMMEEEE
EEAESKRPLHDLCFHLLKLYSDRHYSLQQLLDPLAVTWQRLDYRLSWHLWGVLQALHYGH
LSAARQGLLHTSYAAQLESAGLWHMAVFILLHIADHTQRERAVREMLTLHCRLQETDESL
RRERFLTERLLIPDQWLHEAKATRARRDADRHGEAWHLYRAGHWSQCHRLLIQHLASDCI
INDNHDYLLEFLEELAVPEHSATIQDWDTAGRVYLDYIRVIKTLQDIQQVESSGYELERL
YADVTSLCSRIELLPCSSARDRLAQSEMAKRVANILRVVLRLQAGDSASDSLVLLAPHIS
RLPMPEDYTLEELRGLTQAYLRQLIVGQ
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcattcggtactcccttcggtggagggacgggggggttcggcacctcg
tcgacctttggccaaccaagacctgcagacacggcctttggggcgacgggaggcttcggg
acgtctgcgttcggggccaccgccaacaccggagggctgttcggccccgcgcagaataaa
cctggcggtctgtttgggtccagtacgttcacccagccggcagcgcccgccaccaacacc
ggctttggttttggagcggcgaccggcaccgcgaccagcttgtttgggaacaccggaaca
ggcgccagcagcggcctcttctcccagccgagcaatgctttcggagcccagaaacccacc
acgtttggaaaagtctccctcccatcgtgtcctccaggctttgggacgagcaccaccagc
ggcgggctgtttgggtccaccaacaccgcctccaaccctttcggtggaggcggtgtcgcc
tccctgtttggcggctcggggttcaccgccgcacagcagcagccgggaacgaccgtaaaa
ttcaaccctccaacaggaactgacaccatggtgaaaggaggcgtgaccaccagcatcaac
accaagcaccagtgcatcacggccatgaaggagtacgagaacaaatccctggaggagttg
aggctggaggactaccaggccggcaggaagggcccgaccaacccgatggcggcgccgacg
ggcagtctgtttggcgccgcggcggcgccgcccaccgccgccaccggcctgttcggcgcc
gcggcgcccaacaccaacttctccttcgggcagaacaagaccacctttggagcagcgccg
gccgccggcggtttcggcgcggcggccggcggcctgttcggccagccggccgcccaaccg
gccagcagcctcttcaaacccttcggtcagaccaccaccgcgccgagcaccggcttctcc
ttcggcaacaccaacaccatgggccaggccaacaccagcaccatgggtctgttcgggaac
acggcggcgcctcaagcgggcggcctgttcggcgcggcgcagcccagcaccgccgccggc
ttcggggcggccaccgggctgtttggacaaaccaacgcagggtttggaaacgtcggcgcg
cagcagagtctgttcggcaacaaggccgccgggttcggcaccaccaccaccagcgccgcc
ccgtccttcggcaccggcaccgggctcttcggcaacaagcccgccctcacgctgggggcc
ggcgccaacacctccaccttcggtttcggcgccaacccggccgccgggagtctgtttgga
accaagccggccgccggaggcctcgggacggcactgggaaccagcttcggagcagcagtg
ggaacaggacaggcgtctctgtttgggaacaaccagagcaaactgggcgccacactggga
acgatgggaaccttcggcgcaaccgcattcaacaccggagccagcaccctcggctttgga
gctccacagcagccaatcgcgctcacggaccccagtgggatggcctcccagcaggctttg
ctccagcagcagctcagcgtcttggcgtactctccgtacggagaatctccgctgttcagg
aacccgctgacggaccccaagaagaaggaggagcgcctgaagccgaccaatccgacggcc
cagaaggctctgaccacgcccacccactacaagctgaccccccgcccggccaccagggtc
cgccccaaggcgctgtcggcgtcggcctccaagtcgcagctcttcgacggcctcgacgac
gacgagccctcgctcaccaacggagccttcgtacccaggaagagcatcaagaaactggtg
ctgaagaacctgaacagcagtcagtacaacagtccaatcaacaaagagacggacgacctc
gcttcccctccagagtacccgcagaacggacacagtcacatggaggaggaggagcggctg
ccgggtcccagcggccgggtggacgacgaccccgaggtcacccagttctacgtcaacccc
atcgctaagcccgtcccacagggccgcgtccaggccagcctgcaggacaccatcagcgac
ctcaacatgcacaagccggccaggaatggaggcctggagctgagcagcgaggacatgatg
gcgtctcctggggatgagtctctgcaggaggaccaagaagaggaggaggaggaggagcag
caggagatccagcagtctcctcacccggcaggcatcgttctgaaccgcgtgggttactac
accatcccctccctggacgacctctccgagatggtggatgaaaacggagcgtgcgtggtg
gacaacttcaccgtcggcaggaaaggctacggctccatcttcttccccggcgaggtgagc
gtgacggcgctgaacatcgacgagatcgtgcacttcagacgcaaagaggtcatcgtgtac
ccggacgacaaaaacaagcctctggagggggaggggctgaacaggcgagccgaggtgact
ctggacggcgtttggccgaacgacaagacggcgtgcacgcagatccggagccccgagcgc
ctgacggagatgaactacgagggtcggctggagaaagcctctcgcaagcagggcgctcgc
ttcctggagtacagagcggagaccggatcctgggtgttcgaggtggcacatttctccaag
tatggcctccaggactctgacgaggaggaggacgtccccctcaaagccgaccccaagaag
ctgaagacgatgtcgtcgctccccgccaggctgcagctccccccctcccagcagcaggtg
gcgccacaggctcagcctgatgccgtggagctaccgggcggcgtggccgagctggatagc
gacatggccgacatcacccagagcttcccgacagagagcatgctgggaggaggagacgac
gacgacctcccggcgtgcgacctggactggacgaacgggaagctcggcggtctgatcccc
gcggagaacgacggcgtctccgcgtccggccgcatggcgtcctcgctgggcatcaacccg
cacaccctccagatcatgaaggcgtcgctgttcgccgaggatgaggaggagagcgacatg
attcaggatcagcgagtgatgaaggtcgacgtctcgtcccctcgcatcgtcgtgccggga
gctcagagccgaccctccgtcggtgggctccttcaggcccggttcacctccggcctcttc
tcccagctgtcggactctcctcgtcctcctcctcttcctcgggggtctccggggcccccc
tccttcctgctgcccccccgcaccccggagctctcggtccggacggtcggcgtccggcgg
ctgggcggcccggtggccctcaaagagtcggtcaccatggggaagggcggcctgctcatg
gacgccgggctgttcgcgggccggtccttccgggtcggttggggtcccggctggacgctg
gctcactgcggccagcggctcggctcgccggcggccaaacgccccgaccgccacgaacgc
accataacagacttcagcttcctgccgaaacccgccaggagcaaaccgctgatcgagagc
ccctacaaggtggtgctggagcagctggcgggtctggatcctcccgtgaagaccggcgag
gagcagcagagccaggcggtgctgcagcgccccctggagatctgcctgaagcactgcacc
gtggacaccagcgacgcctccgcctgcccgctggtgcgcccgcagcccggcgtggcggcg
ctgcacgagtacgccgagtggatcgtggagctgagcggcgagcgaggcgacgccgacccc
ctcctgggctactggtccgaggtctggaccctgtgcgaggccctgtggggccggatgggc
cccgcccacctggagcccgacgccgagccgcccggcgcctacgagcagcagctggagagg
aggcggaccttctcggcctggctgtcccgcggcgcggcgcgccgggtggaggaggaggtg
gcgctggccacgaagggccggcacgcggacgccgtcttcagctacctgacggggaaccgc
gtcagcgaggcgtgtcgcctggcgcagaaggaaggagaccaccgtctgtccctgctgctg
tctcaggccgccggatcgcagtactgccgggacctgctggccctgcagctcacggactgg
aaccgcatgcagaccgacagctacctgcccgaggagcggctgcgcatcttcacgctgctc
tccgggaaacccgtgtggcagtcgtccgactccgtggtgaacgtctgctccgagctggac
tggaagcgctgcgtggccgtccacctctggttcatgctgccgccgacggcctccgtggcc
gacgccctcgccagatatgaagccgccttccagggctcatgtgaggggggcaagtacgcc
tgcgcccccctgcccgcgtacctggaggcggagcaggcggacatgatggaggaggaggag
gaggaggcggagtctaaacgtccgctgcacgacctctgcttccacctgctcaaactctac
agtgacagacactacagcctgcagcagctgctcgacccgctggccgtcacctggcagcgg
ctggactaccggctcagttggcacctgtggggcgtcttgcaggcgctgcactacggccac
ctgagcgccgcgcggcagggcctcctgcacaccagctacgccgcgcagctggagagcgcc
ggcctctggcacatggccgtcttcatcctgctgcacatcgccgaccacactcagcgcgag
cgagcggtgagggagatgctgacccttcactgccgcctgcaggagacggacgagtctctg
cggagggagcgcttcctgaccgagaggctgctgatcccggatcagtggctccacgaggcc
aaggccaccagagcgcgccgcgatgccgaccgccacggggaggcgtggcacctgtaccgg
gccgggcactggagccagtgtcaccggctgctcattcagcacctggcctcagattgcatc
atcaacgacaaccacgactacctgctggagttcctggaggagctggcggtccctgaacac
agcgccaccatccaggactgggacacggcggggagggtttacctggactacatccgggtc
atcaagactctgcaggacatccagcaggtggagagctccggctacgagttggagcgcctc
tacgctgacgtcacgtctctctgcagcagaatcgagctgctgccctgcagctccgcccgg
gaccggctcgcccaatcagagatggcgaagcgcgtggccaacatcctgcgcgtggtgctc
cggctgcaggcgggcgactcggcctccgactcgctcgtcctgctggcgccgcacatcagc
cgcctgccgatgccggaggactacacgctggaggagctgcgcggcctcacgcaggcgtac
ctgcggcagctcatcgtcggccaatga
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