Cyclopterus lumpus (lumpfish): 117743222
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Entry
117743222 CDS
T09199
Symbol
vps36
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117743222 (vps36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117743222 (vps36)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clum04147
]
117743222 (vps36)
Membrane trafficking [BR:
clum04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
117743222 (vps36)
Exosome [BR:
clum04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117743222 (vps36)
Exosomal proteins of colorectal cancer cells
117743222 (vps36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Xre-like-HTH
TssO
MA3
Motif
Other DBs
NCBI-GeneID:
117743222
NCBI-ProteinID:
XP_034406943
Ensembl:
ENSCLMG00005010764
LinkDB
All DBs
Position
14:11419008..11423905
Genome browser
AA seq
382 aa
AA seq
DB search
MDRFSWSNGLLEINETLVIQQRGVRLYDGDDKAKLDVGVALLSTHRLIWRDVKNHECCIA
MPLSQILLFEEQAAGIGKSAKIVIHLQATPANKEPGPYQHSKYSFIKLSFKEHGQIEFYR
RLTEEMTRKRWENTPASQPIPIGTGSQAGRTRAVGIVGIERKIEEKRKETDKNISEAFED
LSKLMVKAKEMVELSRSIANKIKDKQGNITEDETIRFKSYLLSMGIADPVTRETHGSGTH
YHMQLAKQLDDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDLVNACKMFESLKLP
LRLRVFDSGVMVVQLQSHSEEEMIASALDNVSDKGSLTAEEFAKLLGLSVLLSKERLLLA
EKMGHLCRDDSVEGLRFYPNLF
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcttttcgtggtcaaatggtctcttggaaataaacgaaactttagtgatccag
caacgaggtgtcagactgtatgacggtgatgataaggctaagctcgacgttggggttgcc
ttgttgagcacccatcggttgatctggagggacgttaaaaaccacgaatgctgcatagcc
atgcccctgtcacagatcctcttgtttgaggagcaggctgcaggaataggaaagagtgca
aaaatagttatccacctgcaagcaacacctgccaacaaggagccagggccctaccaacat
agcaagtactccttcatcaagctgtccttcaaagaacacgggcagattgagttttacagg
agactaacagaagaaatgactcggaagagatgggagaatacaccagcttcacagcccatc
cccataggaacgggctctcaggcaggaagaacacgtgccgtggggattgttggcattgag
aggaagatagaggagaagaggaaagaaacggacaaaaatatttctgaggccttcgaggat
ctcagtaagctgatggtaaaggccaaggagatggtggagctgtccagatctatagccaac
aagatcaaagacaagcagggaaacattacagaagatgagacaattcggtttaagtcctac
ctgctgagcatgggtatagctgaccccgttaccagggaaacgcatggatcaggtacacat
taccatatgcagctagctaagcagctggacgatatgctacaggctcctcttgaggagcgt
gggggtatgatggctcttacagaggtgtactgtctcgtcaaccgcgctcgagggatggag
cttttatctccagaagatttggtaaacgcctgcaagatgtttgagtcgttgaagctcccg
ttgaggctgcgtgtgtttgacagtggtgtgatggtggtccagctgcagtctcacagcgaa
gaggaaatgatagcctcagcactggacaatgtgtcagacaaaggctctttgacagcagag
gagtttgcaaagctcttgggtctctctgttcttctctcgaaagaaaggttgttgctggct
gagaagatgggccacctgtgtcgagatgactctgttgagggtttgagattctacccaaac
ctcttttga
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