Cyclopterus lumpus (lumpfish): 117743641
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Entry
117743641 CDS
T09199
Symbol
srfb
Name
(RefSeq) serum response factor b isoform X1
KO
K04378
serum response factor
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117743641 (srfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117743641 (srfb)
Transcription factors [BR:
clum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
117743641 (srfb)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
117743641
NCBI-ProteinID:
XP_034407197
Ensembl:
ENSCLMG00005008980
LinkDB
All DBs
Position
15:17654036..17673641
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AA seq
596 aa
AA seq
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MLPIRVGSAPSGNGSASGRGNTGHGSGIVGGGIRPVLIRVGQALPGVSESDGRQGERDAV
GMLGANGPGGSRGVRPGNGTGVTPLQTVVQGNMVGINTGVVLPHGARFEPDRESAPLCSG
SDNDSDSGDDDDPVGSLGDSRRGVKRERGEMEAAVTGQEVGIPPGGYGMVPGGVAGAKPG
KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF
ATRKLQPMITSETGKALIQTCLNSPDSPPRSDPSTDQRMSATGFEETDLTYQVSESESMG
DTKDTLKPTFTVASLPGGTSSAQCTVPTTSTTMQVSSGPSFPITNYLAPVSASGNICANG
TVLKTTGGSAGVMQLPSGFTFMPAGTTLPPGTPTIPLSQLQQHSLALQGQHGQALAAAPQ
PMQGQQAVFRFPAAVSLTGPGLSQQLQAIQVHHNAQSISDSGLDICHTSTNSTATVSLPA
TIVTSSLPTSVAGHMMYPSPHTVMYASTPTLTDGGLAVLNAFSQGTSAMQVSHAQAQDSG
AVPQVFLTAPPGTMQIPVSAVQLHPMVIGPQSSGSSSNLTELQVVNLDAAQNSKSD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgatccgggtcggttcggcaccatctggaaacgggtcagcttcaggcagaggt
aacacgggacacggttcggggattgtcggcggcgggatccgtcccgttttaatcagagta
gggcaagctttaccgggggtcagcgagagtgacgggcgacagggggagcgagacgccgtc
gggatgctgggggctaacggtccagggggctcgaggggcgtgaggccggggaacgggact
ggcgtgacccctctccagaccgtcgtccagggcaacatggtggggataaacacgggagtg
gtgctgcctcacggtgccaggttcgaaccggacagggagagcgcgcctctgtgcagcggt
tcggataatgactcggactccggagacgacgacgacccagtgggttcactcggggacagc
aggagaggggtgaagcgcgagcgaggggagatggaggctgcggtgacggggcaggaggtg
gggatacctcccggaggttacggcatggtgcccggaggggtcgcgggggcaaagccgggg
aagaaaacacgtgggcgcgtaaagataaagatggaatttatcgacaacaagttgagacgt
tacaccactttcagcaagaggaagactggtattatgaaaaaggcctatgaactctccacc
ctgacgggaacccaggttctactgcttgtggccagtgaaactggtcacgtctacacgttt
gccacccggaaactccaacccatgatcacaagtgaaacgggcaaagcgctgatccaaaca
tgcctcaactcgccggactcgccgccgcgctcggacccctccacggaccagcgcatgagt
gccacgggctttgaggagacggacctcacctatcaggtgtctgagtcggagagcatgggc
gacacaaaggatacactgaagccaacgtttacggtagccagcctaccgggcggtacaagc
agcgcccagtgcacagtacccaccacctccaccaccatgcaggtgagcagcggcccttcg
tttcccatcaccaactacctggcacccgtctcggccagcggcaacatctgtgcaaacggt
accgtcctcaagaccaccggcggctccgcgggggtcatgcagctacccagtggcttcacg
ttcatgcccgcaggcactactctcccccctggcacccccaccattcctctgagccagctg
cagcagcactccctggcccttcaggggcagcatggccaggccctggctgccgccccgcag
ccgatgcagggacagcaggctgtcttccgcttccctgctgctgtctccctcacaggacca
gggctttcccagcagctccaggctatccaggtccaccacaacgcccagtccatctccgac
agcggcctcgacatctgccacacctccacaaactccaccgcgacggtaagtctcccggca
accatcgtcacctcgtcattgccgacgtctgttgcgggtcacatgatgtaccccagcccg
cacacggtgatgtacgcctccacgccgacgctgactgacgggggactggctgtgctcaac
gccttctcccagggcacctcggccatgcaggtgtcccacgcacaggcccaagactcaggt
gccgtccctcaggtgttcctcacagcacctccaggcacgatgcagatccccgtctctgcg
gtgcagctacacccaatggtgattggtccgcagtcgagcggcagcagcagtaacctgacg
gagctccaggtggtcaatttggacgcagcacaaaactcaaagagtgactga
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