Cyclopterus lumpus (lumpfish): 117743667
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Entry
117743667 CDS
T09199
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117743667 (zswim8)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
117743667 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
117743667
NCBI-ProteinID:
XP_034407261
Ensembl:
ENSCLMG00005007548
LinkDB
All DBs
Position
15:complement(23890342..23909796)
Genome browser
AA seq
1990 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVTSQSGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPCRRLELAGQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLDGITYCTADKKSATFCWSRAVQHQRGVKAAAGGEPPEPGGGARGDGGAAGDYKGRGHA
SQQEVAVRPKETILTKRKGLSVSGGGGMLVRLGGGVALSLEDAGGKCLYKGPGSASGGKL
KLAQGGGKGVSAGGPGGSGGSGGSGGSGGSGGSGGSGGSGGIGGGKHAGAKRRTSSEDSS
LEPDLAELSLDDGCSLALGAEASNTFEFLPPAPEMLPSPSPLLRDSRKYNNGGKMFEAKP
AVVVMDTAGAAEKDAAPEATPVQNKDEDVDSAGSNQPTTSTTTVRSGATQPSAKTLRARR
EAAPGGAAAAGQPANQGAEAASGAAGGDAAGDDDYQAYYPSAASEEGADRPLAENHHQEE
EPDIFAGMKPLEQEGRMEVLFACAEALYAHGYSNEACRLAVELARDLLANPPDLKVEQPQ
TKGKKSKVSTSRQTQVATNTLSKAAFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKA
LEVKLAYQESEVVSLLKKIPLGLVEMSAIRERGEQLRDGNFCDYRPVLPLMLASFIFDVL
CTPVCAVVSPTGSRPPSRNRNNDMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRRV
KGDLALALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAAGSQRSPSKHTV
TGHSGASGGVSKHAPSSSSATAVAPSSAAVAGEEAAHQADLSPVQNNNSTAGESTAEAKE
HVSDGPPPSSEQQNEAAPFKLEATVPSRLALGARCGYNQRCWGSPVRQKKKHTGMASIDS
SAPETTSDSSPTLSRRPLRGGWAATSWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGGG
ARAKSTDTSRMNSVPCGVFPVSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAG
GNSSTSIFTQPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITG
QAMEIGSAALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALN
PNEIQRALVQCKEQVPVLPWRPFDVKLSQKKLSRPVSLQDNVMLEKACMAVEEAAKGGGV
YPEVLFEVAHQWYWLYEQSVGGGSGQQRETSGRCGANGGSGRRNLESSCIVLDAGGNMES
AGVATVTASVTAATVVPVISVGSTIYQSHAMPGQAMVHPHGQGLHPYTTIQAHLPTVCTP
QYLGHPLQHVPRPTVFPVAGAAYPQVIHPAFIGSQYPFSVATGPPGPPMAATAVTFPGVP
LPSMTQIAVHPYHAETGLPLGTTVAVGSMHSGPTIQAIQAAALPCLSTQPGSLVGTPFPA
EDEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLA
ARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQA
YLQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQR
ISMEMATFSP
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgccgagtgggaggatggggagaggttctccttcgaagactcggac
cggttcgaggaagactctctgtgctccttcatctcagaggccgagagcctctgtcagaac
tggagggggtggaggaagcagtccgctggacccaactccccgactgtcaagatcaaagac
ggtcaggtgattccactggtggagttgtcggcgaagcaggtggcgttccacatcccgttt
gaggtggtggagaaggtctacccccccgtcccggaacagctccagctccgcatcgcctac
tggagcttccccgagaacgaggaggacatcaggttatattcctgcctggctaatgggagt
ccggatgagttccaacgtggagagcagctctacaggatccgagctgtcaaagaccctctg
cagatcggtttccatctcagtgctaccgtggtaaccagccagtccggtcagtccaagggg
gcctacaatgtggccgtcatgtttgaccgctgccgcatcacttcctgcagctgcacctgc
ggcgccggggccaagtggtgcgcccacgtggtggcgctctgcctcttccggatccacaat
gcatcagcagtgtgtctgagggctccagtctctgagtctttgtccaggctgcagagggac
cagctccagaagttcgcccagtacctcatcagtgagctgcctcagcagatccttcccacc
gctcagcggctgctggatgagctgctgtcctctcagtcgactgccatcaacaccgtgtgc
ggagctccagaccccacagcaggcccttcagcatctgaccagagtacttggtatttggac
gagtcgaccctcagcgacaacatcaagaagactctgcacaagttctgtgggccctcaccg
gtcgtcttcagcgacgtaaactccatgtacctgtcgtccacggagccgccagctgccgct
gaatgggcgtgtcttctgcggcccctaaggggccgagagccagagggcatctggaacctt
ctgtccatcgtcagggagatgttcaagaggcgagacagcaacgccgccccgctgctcgag
atcctcacggagcagtgcctcacctacgagcagatcatcagctggtggtacagcgttcgg
acctcggcgtcccacagcagcgccagcggccacaccggacgcagcaacggccagtcggag
gtggcggctcacgcctgcgccagcatgtgcgacgagatggtggtgctgtggaggctggcg
gtgctcgaccccaccatgagcccctgcaggcgtctggaactagcaggccagctgaagcag
tggcacctgaaggtcatagagatcgtgaagcgcggacagcatcgcaagtccctggataag
ctgttccagggcttcaagcccgccgtggagtcctgctacttcaactgggaggtggcctac
ccgctggacggcatcacctactgcactgctgacaagaagagcgccacgttctgctggtcc
agggcagtgcagcaccagagaggagtcaaagctgctgcaggcggagagccccctgaacca
gggggcggggccagaggggacggtggagcggccggagattataaaggaagaggtcacgcg
tcccaacaggaggtggccgtgcggcccaaagagaccatactgaccaagaggaaaggcctg
tcggtgagcggagggggaggaatgctggtccgtctgggagggggcgtcgctctgtccctg
gaagacgcaggagggaagtgcctgtacaaagggccgggctccgcctctggagggaagctg
aagctggcacagggaggtgggaagggggtgtctgcaggaggcccaggtggaagtggagga
agtggaggaagtggaggaagtggaggaagtggaggaagtggagggagtggagggagtgga
gggatcggaggtggtaagcacgctggtgccaagcggagaaccagcagtgaagacagctcc
ctggagccggacctggcggagctcagcctggacgatggctgcagtctggctctgggggcc
gaggccagcaacacctttgagtttctgcccccggcaccagagatgctgccctccccgagc
ccgctgctccgagactcgcgcaagtacaacaacggcggcaaaatgtttgaggcaaagccg
gcggtggttgtcatggacacggccggcgccgcagagaaggacgcggcgccggaggccacg
cccgtccagaacaaagacgaagatgtggactcggccggcagtaaccagccgaccacctca
accactacggtgagatcaggcgccactcagccgtctgccaagaccctgcgggcccgcaga
gaggcggcgcccggtggagcggcagctgccgggcagccggccaaccagggagcagaggca
gcgagtggagcagcggggggagacgctgcgggcgacgacgactatcaagcctactacccg
agcgccgcctcggaggagggagcggaccgaccgctggccgaaaaccaccaccaggaggag
gagccagacatcttcgcagggatgaaaccgctggagcaggagggacgcatggaggtgctg
tttgcatgtgcagaggccctctatgctcatggttacagtaatgaggcgtgccggctggcc
gtggagctggccagagacctgttggccaatcctccagaccttaaagtggagcagccccag
actaagggtaagaagagcaaggtgtcgaccagccgccagacgcaggtcgccaccaacacg
ctgtccaaggccgccttcctgctcacggtcctcagtgagcgactggagctccacaacctg
gccttcagcaccggcatgttctccctggagctgcagaggccaccggcctctacgaaagct
ctggaggtgaagctggcctaccaggagtccgaggtggtgtctctgctgaagaagattcct
ctgggcctggtggagatgtcggccatcagagagcgaggcgagcagctcagagacggaaac
ttctgtgattaccgaccggtgctgccgctcatgttggccagcttcatctttgatgtgctc
tgcaccccagtttgtgcagtcgtgtccccgacgggttcccggccgccgagccgcaaccgc
aacaacgacatgcccggagacgaggagctgggcttcgaggccgccgtcgccgctcttggt
atgaagaccacagtgagcgaggcggagcatcctctgctgtgtgaaggaactagacgggtg
aaaggggacctggctctggccctcatgatcacctataaggacgaccagagcaagctcaag
aagatactggataaattgctggaccgggagagtcagacccacaagccccagactctaagc
tccttctactccagcaagccggcagccggcagccagcgcagcccgtccaagcacacggtc
accggccacagcggggccagcgggggggtctccaaacatgcgccctcctcctcgtctgcg
accgcagtggcaccctcttctgccgccgtggctggcgaagaggcggctcatcaggctgat
ctgagcccagtgcagaacaacaacagcacagcaggagagagcactgctgaggccaaggag
cacgtgtcagatgggcctcctccatcgagtgagcagcagaatgaagcggctccattcaag
ctggaggccacggtgcccagccggctggcgctgggggcgcgttgtggctacaaccagcgc
tgctggggctctcctgtccggcagaagaagaaacacacaggcatggcgagcatcgacagc
agcgctccggagaccacctcggacagctcgcccactctcagccgccggccgctccggggc
ggctgggcggcaacatcctgggggcggggccaggacagtgacagcatcagcagctcctcg
tccgattcgctgggctcctcctcctccagcggctctcgcagggcagggggcgggggcggg
gccagggccaagagcaccgacaccagcaggatgaactcagtcccatgtggtgtgtttccc
gtgtccaggtacaaaggccggcgtccagagtgccacgccccccacgtgcccaaccagccc
tcggaggcagccgcccacttttactttgagctggccaagacggtgctgatcaaagccgga
ggaaactcttccacttccattttcacccagccctcggccagcgggggtcaccagggaccc
cacaggaacctgcacctgtgtgcctttgagatcggcctgtacgctctcggcctccacaac
tttgtctcccccaactggctgtccaggacctactcctcccatgtgtcctggatcactggc
caggccatggagatcggcagcgccgccctcaacattttggtggagtgttgggacggtcac
ctcacccccccagaggtcgcgtccctcgctgaccgagcgtcgcgggccagggaccccaac
atggtccgggcggcagcagagctggccctgagctgcctgcctcacgctcacgccctcaac
ccaaatgaaatccagagagccctggtgcagtgcaaagagcaggtaccagtgttgccatgg
agaccttttgatgtgaagctttctcaaaagaagctgtcccgccccgtctccctgcaggac
aacgtgatgctggagaaggcctgcatggccgtcgaggaagcagccaagggcggcggcgtg
taccccgaggttctgtttgaggtggcccaccagtggtactggctgtatgagcagtcggtg
ggcgggggctcgggccagcagcgggagacctccgggcgctgcggggccaacggcggctcg
ggcaggaggaacctggagtccagctgcatcgtgctggacgccggcggcaacatggagtcc
gcgggggtggcgactgtcacggcctcggtcaccgcggcgaccgtcgtgcccgtcatctcc
gtgggatccaccatctatcagtcccacgccatgccggggcaggccatggtgcacccccac
ggccagggcctccacccctacaccaccattcaggcccacctccccaccgtctgcaccccc
cagtacctggggcaccccctgcagcatgtcccccgacccaccgtcttccctgtggctggg
gctgcgtacccacaggtaatacatccggccttcatcgggtcccagtacccgttctcagtg
gccactggcccccccgggcctccgatggcagccacggccgtgaccttccccggtgtcccc
ctaccgtccatgactcagatcgccgtccacccctaccacgctgagacgggcctgcccctc
ggcaccaccgtagcagtaggcagcatgcactcgggccccaccatccaggccatccaggca
gcagcgctgccctgcctctccacccagcccggctcattggtcggcactcctttccctgcc
gaggacgagcagcacagccagccaatcagccaacagggcctgcactacctgcattctgcc
tacagagttggcatgctggcattggaaatgctgggcaggagggctcacaatgaccacccc
aacaacttctccaggagcccgccttacacggaggacgtcaaatggctgctgggactggct
gcgaggctaggagtcaactacgtgtaccagttctgtgtcggagcagctaaaggtgtcctc
agcccgttcgtcctgcaggagatcatcatggaggctctgcagaggctgaaccccgcccac
atccacgcccacctccggacgcctgcgttccaccagctggtccagcgctgccaacaggcc
tacctgcagtacatccaccaccggctcatccacctgacgcccgccgactacgacgacttc
gtcaacatcatccgcagcgcccgcggcgccttctgcctgacgcccgtgggcatgatgcag
ttcaacgacgtgctgcagaacctgaagaggggcaagcagaccaaggagctgtggcagcgc
atctccatggagatggccaccttctccccctga
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