Cyclopterus lumpus (lumpfish): 117743687
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Entry
117743687 CDS
T09199
Symbol
dis3
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117743687 (dis3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117743687 (dis3)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117743687 (dis3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
Dis3l2_C_term
Voldacs
Motif
Other DBs
NCBI-GeneID:
117743687
NCBI-ProteinID:
XP_034407313
Ensembl:
ENSCLMG00005020569
LinkDB
All DBs
Position
15:complement(8796426..8804505)
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AA seq
954 aa
AA seq
DB search
MLKSKTFMKKTRSGGVMKIVREHYLRDDIWCGSEICTECKQESPVLQRDPSIESNLCSYP
HYVIPDTNVVLHQIDVLEDPVIRNVIILQTVLQEVRHRSAPVYKRLKDIIHEQEKHFYTF
TNEHHRETFIEREPGESANDRNDRAIRVAAKWYGQHLEKAESEADALKVVLLTNDLGNKQ
KAEESSLLVYRCEEYIKSLIGNPELVDRLALSNDDKHDITSSKVLFPEHLPLSRIQAGIK
SGTFLQGTFRASRDNYLEATVFVQGEGEDSTEVLIQGLQNLNRAVYQDVVAVQLYPRNQW
LAPSSVMLQDEGAAKDDNEEDKEEEDEEKSLRISAAEAARKPTGKVVGIIKRNWRPFCGM
LNLSQIKESTRHLFTPADRRIPRIRIETRQAATLAGQRIMVAIDGWPKHSRYPNGHFVRS
LGNAGDKETEQMVLLLEHDVPHQAFSQAVLSSLPKMPWAITPEDMVRREDLRHLSVCSVD
PPGCTDIDDALHCRELDNGNVEVGVHIADVSHFIRPCNAMDKEAANRGTTVYLCGKRIDM
VPELLSSNLCSLRSNVERLAFSCIWEMNHKAEIIKTRFTKTVINSKASLTYAEAQMRIDD
TTKNDDITKSLRGLNKLAKVLKRQRIEKGALTLSSLEVRFHIDSETHDPIDLQTKELMET
NSMVEEFMLLANISVAQKIYDEFPDCAMLRKHPAPPPSNYDILLKAAKSKDVEIHTDSAK
ALADSLDMARVDGFPYFNTLLRILATRCMMQAVYFCSGMDTDFHHYGLASAIYTHFTSPI
RRYADIIVHRLLAVAIEADSTYPDLMDKQKQSALSTNLNYRHKMSQYAQRASVAFHTQLF
FKSRGILNEEGFVLFVRKNAIIVLIPKFGLEGTVFFDAKHKATPKLVFDEEGPTLKVEQH
TFHIFDMVKVTISLDASNIQHQKIRMSLIEPVISGVSVPAPVVEPQAKKPKLDR
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaatctaaaaccttcatgaagaagacccggtcgggtggggtgatgaagatagtt
cgtgagcattacctgagagatgatatttggtgcggaagcgagatttgcactgaatgcaaa
caggagtccccggtgctgcagagagacccgtctattgagagcaacctgtgctcttatcca
cattatgtgattcctgacactaatgttgtgctgcaccagattgacgtcttggaagaccct
gtgattcgtaatgtgataatccttcagactgtgctacaggaggtacgccaccgcagtgca
ccagtctataaacgcctgaaggacatcatacatgagcaagagaaacacttctacaccttt
accaacgaacaccacagagagacattcattgaacgtgagcccggagagagcgccaatgac
cgcaacgaccgcgcgatccgtgtggctgcaaaatggtacggccagcacctggagaaggcc
gagtccgaagcagacgcactcaaggtggtcctcctcaccaatgacctagggaacaagcag
aaggcagaggaaagcagcttgctggtgtacagatgtgaagaatacatcaagagtctgata
gggaaccctgagcttgtggatcgtctggctttgtccaatgatgacaagcatgatatcaca
agcagtaaggtgttattcccagagcacctccccctgtccaggatccaagcaggaattaag
agcggcactttcctccagggcacctttagggccagcagggacaactatctggaggccaca
gtctttgttcagggagagggtgaagacagcacagaggttctcatccaaggtcttcagaac
ctcaacagagcagtgtaccaagatgtcgttgctgtgcagctgtacccgcgcaatcagtgg
ttggccccgtcctcagtcatgctgcaggatgaaggcgcagcaaaggacgataatgaggag
gacaaagaggaggaggatgaggagaaatcattgaggatatccgcagctgaagcagccagg
aagcccacaggcaaagtagtgggaatcatcaaaaggaactggaggccattctgtggcatg
ctcaatctctcccagatcaaagagtcaactcgccatctcttcaccccggcagaccggcgt
atcccacgcatccgcattgaaacacgtcaggcggccacgctggcaggccagaggatcatg
gtggccatcgacggctggcccaaacactccagatatcccaatggccattttgtgcgcagt
ctgggaaatgcaggagataaggagacggagcagatggtgctgctgctggagcatgacgtc
ccccatcaggccttctctcaggctgtgctcagttcccttcccaagatgccatgggccatc
acaccagaggacatggtgaggagagaggacctgaggcatctgtcagtgtgcagtgtggat
cctcctggatgtacagacatagatgacgccctgcactgtcgagagctggacaatggaaac
gttgaggtgggcgtccacattgctgatgtaagtcacttcatcagaccgtgtaacgccatg
gacaaggaggctgcgaaccgtggcaccactgtctacttgtgtggcaaaaggatagatatg
gttccagagctgctcagctccaatctttgttctctacgctccaatgtggaacggctggct
ttctcatgtatctgggagatgaaccacaaggctgaaatcattaagacccggtttacaaaa
actgtcattaactccaaggcgtccttgacctatgctgaggcccagatgaggattgatgac
accactaagaacgatgacatcaccaagagcctgcgaggtctcaacaaactagccaaagtc
ctcaagaggcagaggatagagaaaggggcgctgacgctgtcatccttagaagtccgattc
cacatagacagtgaaacccacgaccccattgacctccagaccaaagaactcatggagaca
aactctatggtggaggagttcatgttgctggccaatatttcagttgcccagaagatttac
gatgaatttccagactgtgctatgctgaggaaacatccagcaccgcctccatctaactac
gacatcctgctcaaagctgcaaagtccaaggatgtggagatccacacagattcggcgaag
gcgctggctgactccctcgacatggccagagtggacggcttcccgtactttaacacgcta
ctgcgcatcttggccactcgctgcatgatgcaggcggtctatttttgttccggcatggac
accgacttccaccactacggccttgcttctgccatttatacacacttcacgtcacctatt
aggaggtacgcagatattatagttcaccgcctgctggcagtggccatagaggcagacagc
acctacccagacttgatggataaacaaaagcagtcagccctctctaccaacctcaactac
agacacaaaatgtctcagtatgcgcagagggcatctgtggccttccacacgcagttgttc
ttcaagagccgaggcatactgaacgaagagggatttgttctgtttgtgaggaagaacgca
atcatcgtactcatcccaaagtttggcctggagggaacggtcttttttgacgccaaacac
aaagcgaccccaaaacttgtttttgatgaagagggtcccactctgaaagtagagcagcac
accttccacatatttgacatggtgaaggtcaccatcagcctggacgcctccaatattcag
caccagaagatccgcatgtctctgattgagcccgtgatttccggtgtgagtgttccagcc
ccagttgttgaacctcaggccaagaaaccaaaactggaccgctga
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