Cyclopterus lumpus (lumpfish): 117743704
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Entry
117743704 CDS
T09199
Symbol
cdh23
Name
(RefSeq) cadherin-23 isoform X1
KO
K06813
cadherin 23
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
clum03037
]
117743704 (cdh23)
04515 Cell adhesion molecules [BR:
clum04515
]
117743704 (cdh23)
Cilium and associated proteins [BR:
clum03037
]
Primary cilia and associated proteins
USH complex and associated proteins
117743704 (cdh23)
Cell adhesion molecules [BR:
clum04515
]
Cadherins
Major cadherins
117743704 (cdh23)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Fibulin_C
Sde0182_C
PCDH15_12th
Motif
Other DBs
NCBI-GeneID:
117743704
NCBI-ProteinID:
XP_034407338
LinkDB
All DBs
Position
15:18214331..18254979
Genome browser
AA seq
2243 aa
AA seq
DB search
MVQATDADQGENGRVLYRILTGNSNNLFSIDNQTGLVTRGFRALDRETSSSHVLEVVAYN
SDEGSMRSSVRVIIYVDDANDEMPVFTQQQYNRLGLRETAGIGTSVIVVRATDPDTGDGG
AVAYALVSGSDRKFVVDVSTGLVTTVDYLDYETKTTYLMNVSATDQAPPFHQGFCTVYVT
LLNELDEAVAFFSAGYEALLRENVATGTEVVQVQAQSADNLNQLTYRFDPDTSPAALALF
KIDSITGRITVTGQLDREKGDMYTLTVVADDGGPKKDSTVKVSITILDENDNSPEFDITS
DTSVDVLENTPMGKKVAMVLARDKDAGLNGLINFTLVAGNMEDVFKIKTVNHTYGDVFVN
AALNRESVDRYLLKVRAIDNGSPPRYTDHSLTINILDVNDNAPVIESQRGYNVSISENVG
GGTSVLRVIATDEDIGPNAMLFYYITAGNQDLTFRMDRVTGEMVTRPAPPDRERQQEYQL
TVTVEDDGTPPLSTSTTIYVHIVDENDNAPEFPEEEYVTVLSEGPDTVGATIATVTAIDP
DEGLNGTLRYAITQGNLIQTFHINSFTGRITAVKELDYEISKGNYALVVTATDQSPQPAL
RLTSSTTVLVNVLDVNDVTPTFPRAFEGPFEVTEGQPGPRVWTLRASDEDSGLNGKVEYS
ITSGDLQNEFMVSPVEGELRVRKDVELDRETTGFYNITVTARDLGSPSRNSSVVVGVNVR
DINDNDPVLLNLPYNTSVSEGASIHTSVARVRARDADSGRNALLTYNITAGNQDGAFYIN
DTTGVVQVNRPLDRERVAEYTLTITVKDNPENPRIARRDSDLLVITILDENDNRPIFTRT
SYRAEITENSEAGATVTVLNGPVLAEDKDIGPNAVVKYRLLGARVDLFTVDANSGVIRVR
QGAKLDREAFQEPRVELFLVGEDIGRLNSSVPLTVTILDQNDNPPVFSPSSFSVRLPENS
PSGVVVTQLSATDADSGSNGWLMYRLVSGAQDRFVVDPLSGAVLVGNTTLDREERGSYHL
VVMATDRGTPPMSGTATLTVILDDVNDSRPRFIEPVTMINVNESTPPGVVVATLTAEDPD
LHPRLEYYIISVEAKDDGNNPVDGMQESFGIDLHTGAVFVHNPLNRELVATFEIIVSVHD
NASEVIDKSGSVPNARLTINVLDVNDNAPRFRPFGVSNFTEKILEGARPGTTLLSVSAVD
PDKGPNGQVIYQLLHLPRGGYVRLEDPSTGKIVANQTVDFEQVQWLNFTIRAQDHGSPPR
IAELPVYLRIVDVNDNNPVFLQPSYQEPVFENVDLGTIIVRVKATDADSGLFAVIEYSLV
DGEGKFGIKPSTGEIYILSPLDRETKDHYTLTAVARDNPGGSSNNRRENSIQVLVTVLDV
NDYRPRFTERVFSTSVFENEPSGTSVITVKANDLDEGENGAVLYRILGLHSDAFSLDPNT
GLVRSRRLLQSSENFNLTVVATDQGRPPLWSTADLIITVIDVNDNRPLFVRPANGTIIHI
SEEQPPGLPVYEVHATDSDEGVNGEVRYGFLQTGAGNRDWENFHIDAMSGVITTTVKLDR
EKQALHSLIIVARDMGQPVPYETTQPLQVALLDIDDNEPVFLKPPRGSLPYQRMAVPEHS
RPGTVVGNVTRAVDADEGSNAIVYYFIAGGNSDGNFGLGLDGELKLLKDLDREEIPVYSI
IIKASSNRSWTLSRGQKAARAKALDPASDPSLLEVRIVLEDINDQKPRFTKAEYTAGVAA
NAKVGSELIKVVAIDNDIGNNSLVQYHIVTIRYFQSQSNGSEDVGSIFIIGLTDGIIRTY
DLFTAYSPGYFQLEILACDLVGHSTTTNVNIYILRGDQRVKIVFNEIPDLVRENQEDFVN
LLSNITGAIVNLDDIQFHVDKKGRVSYGQTDMLIHVVNNQSNTILDVARVIQMIDENKEQ
LRNLFRKYTVVDVQPAVSDKLPDDITTLQLVIIILAVLLCLAGILFVTMNWHYHRVHQRK
LKAIVAGSTGNQGLMDILDMPNTNKYSFEGANPVWLDPFCRNLELAAQADHEDDLPENLS
EITDLWNSPARTHGTFGREPQAKPEDDRYLRAAIQEYDNIAKLGQIMREGPIKGSLLNVV
LDDYLRLKKLFAARLVTVSTSQGDHSSVTELIQSDKDDDEDEHLVMGGGRGTLRFKHKLP
VELKGPEGVHVVHGSTGTLLTSDLNSLPEDDQRALARSLEALNADGCLYSERNSRTESAK
STPMHRHKNGDTLSESPLEITEL
NT seq
6732 nt
NT seq
+upstream
nt +downstream
nt
atggttcaagctacggatgccgaccagggggagaacggccgagttctgtacaggatcctc
accgggaacagcaacaatctgttcagcatagacaatcagactggactggtgaccagaggc
ttcagggcactggacagagaaaccagcagctcccatgtgctggaagtggtggcctacaac
agtgatgagggcagcatgaggagctccgtgagggtgatcatatatgtggacgatgccaat
gacgagatgccagtgtttacccagcaacaatacaaccgtctgggcctgagggagaccgct
ggcattggcacctccgtgattgtggtgcgtgccacagaccctgacactggtgatggtgga
gctgttgcttacgccctcgtgtccggctcggaccgcaagtttgttgtggacgtgagcact
ggcctggtcaccactgtggactacctggactacgagaccaagaccacctatttgatgaat
gtctcggctactgaccaggcacccccgttccaccaaggtttctgcacggtctatgtcacg
ctgctcaatgagctggacgaggccgtggccttcttctccgccggttacgaggctttgctt
cgcgagaacgtcgccacagggacagaggtagtccaggtgcaggcccagtcagccgacaac
ttgaatcagttgacttaccgcttcgaccctgacacgtcgcctgcagctctggccctcttc
aagatagacagcatcacgggccgcatcactgtgacaggccagctggacagagagaagggg
gatatgtacaccttgactgttgtagctgatgatggaggacctaaaaaagactccaccgtg
aaggtttcaatcaccattctggatgaaaatgacaacagtccagagtttgacatcacatca
gatacttcagttgacgtcctggagaacacacccatggggaaaaaagtggcaatggtgctg
gcaagggacaaagatgctggattaaacggactgatcaatttcactctggtagcaggcaac
atggaggatgtgttcaagatcaagacagtgaaccacacctacggggatgtttttgtcaat
gctgctctgaacagagagtcagtagaccgctacctactgaaggtgcgtgccattgacaat
ggctcacctcccagatacacagaccactccctcaccatcaacatcctggatgtcaatgac
aacgcacctgttattgaaagccagaggggctacaacgtcagcataagtgagaatgtcgga
ggaggtacgtctgtcctccgcgtaatagcgaccgacgaagacatcggtcccaacgccatg
ctgttctactacatcactgctggaaaccaggacctgaccttccgcatggaccgcgtgaca
ggagagatggtgacacggcccgcccctcccgaccgagagcgccagcaggagtatcaactc
actgtcactgtggaagatgacggcacaccgcctctgtcgacctcaaccaccatctacgtt
cacatcgtggatgagaacgacaacgccccagagtttcccgaggaggagtatgtcacggtg
ttgagcgagggaccagacacagtgggtgccaccatcgccacagtaacagccatcgaccca
gatgagggtctaaacggcaccctgcgatacgccatcactcaaggaaacctgatccagacc
tttcatatcaacagcttcacggggagaattacagctgtgaaggagctggactacgagatc
agcaaaggaaactatgcgctggtcgtcactgctacggaccagagtcctcagcctgctctt
cgcttgacatccagcacaactgtgctggtaaatgtccttgatgtgaacgatgtaacaccc
acttttcccagagcctttgagggacccttcgaagtgactgagggccagccaggacctcgg
gtctggactctcagagccagtgatgaagactctgggcttaacggcaaagtggagtacagt
atcaccagtggagatctccagaatgagttcatggtttctccagtggagggcgagctgcgg
gtgaggaaggacgtcgagctggacagagaaacaacaggcttctacaacatcactgtcaca
gccagagacctgggcagcccatctcgcaacagctcggtggtggtgggggtcaacgtccga
gacatcaacgacaacgacccagtcctcctgaacctaccttacaacaccagcgtgagtgaa
ggcgccagcatacacacctctgtggccagggtccgagcacgagatgcagacagcggacgc
aacgccctgctaacgtacaacatcaccgccggcaaccaggacggagccttctacatcaac
gacacgacaggtgtggtgcaggtgaacagaccgctggacagagagcgagtggctgagtac
acactcaccatcaccgtcaaagacaaccctgagaacccccgcatcgctcgcagggattca
gacctcttagtgatcaccattctggatgagaacgacaaccggccgatattcaccaggacc
agctacagggcagagatcacagagaactctgaagcaggtgctactgtaacagtgttaaat
gggcctgttctggctgaggataaagacattggacccaatgctgtggtgaagtaccgcctg
ctgggagccagggtggacctctttactgtggacgccaattctggtgtgatacgtgtgcgt
cagggggcgaagttggaccgcgaggcgtttcaggagcctcgggttgagctgttcctggtt
ggggaggacataggaagattaaacagcagtgtccctctcacagttaccatcctggaccag
aatgacaaccctcctgtcttcagcccttccagcttcagcgtgcgactccctgagaacagc
ccctccggtgtggtggtgactcagctgtccgccaccgacgctgactctggctctaatggc
tggctgatgtatcggctggttagcggcgctcaggaccgcttcgtggtcgacccgctctcc
ggcgcggtcctggtgggcaacaccacccttgatagagaagagcgcgggtcctaccacctg
gtcgtcatggcgactgatcgtggcacaccccccatgtcgggcacagccaccctgacagtc
attctggatgacgtcaacgactcacggccccgttttatagagccagtcaccatgataaat
gtcaacgagtccaccccaccgggtgtggtggtggccacgctgaccgccgaggaccctgat
ctgcatccccggctggagtattacatcatctcagtggaggcaaaggatgatgggaacaac
ccagtggatgggatgcaggagtcctttggcattgatctacacacaggtgccgtgtttgta
cacaacccgctcaacagggagctggtcgctacatttgagatcattgtgtccgtccatgac
aacgccagtgaagttattgacaagtcaggaagtgttcccaacgcgagactaaccataaac
gtgttggacgtaaatgacaatgcccctcgtttccggcccttcggagtgtccaacttcaca
gagaagattttagaaggagctcggccaggcacaacactgctatcagtatcagctgtagac
cccgataagggtcccaacggccaggtcatctaccagctgctccacctgccccggggggga
tacgttagattggaggacccttccactggtaagattgtagccaaccagacggtggatttc
gagcaggtgcagtggctgaatttcacgattcgggcgcaggaccatggctctcctcccaga
atagctgagctgccagtttatctgcggatagtggacgtgaatgacaacaacccagtcttc
ctacaaccctcataccaggagcccgtgttcgagaacgtggacctgggcaccatcatagtt
cgtgttaaggctacagatgctgactctggcctctttgctgtcattgagtacagcctggtg
gacggggagggcaagtttggcatcaaaccatccactggagagatctacatcctttctcct
ctggacagggagacaaaggatcactacactttaaccgctgttgcccgtgacaaccctggt
ggcagctccaacaacagacgagagaactctatccaggttctggtgaccgtccttgatgtc
aacgattatcgaccccgctttacggagcgagtgttcagcaccagcgtgtttgagaatgag
cccagtggaacgtctgtgatcacagtgaaggccaacgacctggatgaaggagaaaatgga
gcggtactctacagaatactgggactccattcggatgcgttctccctggatccaaacaca
gggctggtgcgttctcgccgcctgcttcagtcctctgaaaatttcaacctgactgtggtg
gctacagaccaggggcgtcctcccctgtggagcactgcagacctgatcattacagtcata
gatgtcaatgacaacaggccgctgtttgtcaggcccgccaatggaaccatcattcatatc
tctgaggagcagcccccgggcctgccggtgtatgaggtgcacgcgacagactccgacgag
ggggtgaatggagaggtccgctatggcttcctgcagactggagcgggcaacagagactgg
gagaactttcacatcgacgccatgtccggagtcatcaccactactgtgaaactggaccga
gaaaaacaggccctccacagcctaatcatcgtggcccgcgacatgggccagccagtgcct
tacgagaccacacagcctctgcaggtggcgttgttggacattgacgacaatgaacccgtc
ttccttaaaccaccgcgtggcagcttgccttaccagaggatggcagtgccagagcactcc
cgacccggtactgtggtggggaatgtaaccagagcggtggacgcggacgagggctccaat
gccattgtctactacttcattgcaggaggaaacagtgatggaaacttcggcttgggtcta
gatggagagctgaagttgcttaaggatctggaccgtgaggagatcccggtctactcaatt
atcatcaaggcttccagcaacaggagctggactctttccaggggtcagaaggcagcacgg
gccaaagccttggaccctgccagtgaccccagcctgctggaagtccgcattgtattggaa
gacatcaatgaccagaaaccccgcttcactaaggcggagtacactgcaggagttgcagca
aatgccaaagtgggctcggagctaatcaaggtcgtggctatagataacgacatcggcaac
aacagcttggttcaataccatattgttacaatccgctatttccagtcacagagcaatggc
agtgaggacgttggcagcatcttcatcatcggtttgacggatggtatcatccgaacatat
gacctcttcaccgcctacagccctggctacttccagcttgagattttggcttgcgatttg
gttggtcacagtacaacaaccaacgtgaacatctacattctccggggtgaccagagggtc
aagatagtcttcaatgagatccctgatttggtccgcgaaaaccaagaagatttcgtcaac
ctgctttccaacattactggagccattgtcaacttagatgatatacagttccacgtggac
aagaagggcagggtcagttatggtcagacagacatgctcatccacgtggtcaacaatcag
agcaacaccatccttgatgttgcaagggtaattcagatgatagatgagaacaaggagcag
ctgaggaacctgttcaggaaatacaccgtcgtggatgttcagcctgctgtcagtgacaaa
ctgccggacgacatcaccacactacagctagtcatcattatcctggctgtgctgctgtgc
ttggcaggaattctgtttgtcacaatgaactggcattatcacagagtacaccagaggaag
ctgaaagccattgttgcaggatcaacagggaaccagggtctaatggatatcctcgacatg
cccaacactaacaagtactcttttgagggagctaatccagtgtggctggacccattctgt
cgcaacctggagctcgctgctcaggctgaccacgaggacgacctgccggagaacctgagt
gagataactgacctgtggaacagccctgcacgcactcatggcacgtttggtcgagagcct
caagcgaagcctgaggatgatcgttacttgagggcagccattcaggagtacgacaacatt
gctaaactgggccagattatgagggaagggcctatcaagggttccctgctcaatgtggtc
ctggacgactacctgaggctgaaaaagctctttgcagctcgactcgtcacagtgtccacc
agtcagggagatcactcgtcagtcactgagctgatccagagtgataaggacgatgatgag
gacgagcatctggtcatgggcggaggtcgcggcacactgcgctttaagcacaagcttcct
gtggagttgaagggtcccgagggtgtgcacgtagtccacggcagcacaggtaccctcctg
acctctgacctcaacagcctgccagaggacgaccagcgggccctcgcacgttctctggag
gccctgaacgctgacgggtgcctctattctgagcgcaactcccgcactgagtcggccaag
tccaccccgatgcaccgccacaagaacggggacaccctgtcggagagtcccctggagatc
acagagttatga
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integrated database retrieval system
