Cyclopterus lumpus (lumpfish): 117743878
Help
Entry
117743878 CDS
T09199
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117743878 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117743878 (herc4)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117743878 (herc4)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
HECT type E3
117743878 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
T7-like_gp12
Motif
Other DBs
NCBI-GeneID:
117743878
NCBI-ProteinID:
XP_034407693
Ensembl:
ENSCLMG00005021848
LinkDB
All DBs
Position
15:18384979..18396628
Genome browser
AA seq
1044 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRTCEFFHGKQVCDLGCGHRHTTFLLEDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIILAVSCGESHTLALNDKGQVFSWGLGSDGQLGLHN
FEECVRVPRNIKSLSEVHIAQVACGYWHSHALSRGGHVFSWGQNQYGQLGLGIDGQSIST
PQIIQSLQGIPFNQISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDCNDRFSPALLKSLR
SQRVIYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNVVTQIS
CGRQHTLAFTPSCGKMDSFGLAGNGQLGTRSTCNRKSPATVKGPWVASKYTDSEPCCYVK
RIYAGGDQSFAHYCTTNKLQNMDDVRIQDPHRKICTLNEDIIHKWCTYSPGRLPLEISNE
IDLVFSSASCLNGSFLSTSHPDHYSTSSKCSGVDMNMARLLLHRVVQRGHHELTQQIAAS
LEKNLIPRLSNSPPDIEALRLYLTLPECALFRDRNSYVTIAIPFAKSLLSLKEAPLKVLG
NWWSTFEPPVFQRLVELYKEVVVYLLQMHKMGIPSVEQRIFTCFLDTSLRLLEILHTVSE
RAGHIIQYDTFYIHELDDLIDIRNDYITWIQRQMYPLGHDGVVTLCRYPFVFDAQAKTTL
LQTDAIIQMQMAVDQAQMQNFSSMFLPAVESVNPCLILIVRRENIVGDTMEVLRKSKNVD
YKKPLKVIFVGEEAVDAGGVRKELFLLIMKELLDPKYGMFRYYEESRLIWFSNKTFEDID
LFNLIGVICGLAIYNLTIVELNFPVALYKKLLKRKPTLDDLKELMPDVGRSLQQLLDYTE
DDLEETFCLNFTITEENYGAIEVLELVRNGEDITVDKSNRQDFVYAYVDYVFNTSVAPLF
ECFYAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWTELEKSTEYKGEYWTDHPTIRLFW
EVFHRLPLEEKKQFLLFLTGSDRIPILGMKSLKLVIQPTSGGEQYLPVAHTCFNLLDLPK
YRSLEILREKLLQAIDYNQGFNLA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctgggggaatgcctcctacggacagctgggcttgggtgggattgatgaggag
attgtggttgagccacgaacatgtgaattctttcacgggaagcaagtgtgcgatttgggg
tgtggccacagacacacaaccttcctgctggaggatgggacggtgtacacctgtggctgc
aatgacctggggcagctggggcatgagaagtccagaaagaaaccagaacaggttgtggcc
ttggatgcacagatcatactggcagtgtcatgtggagagtcccatacacttgcccttaat
gacaaagggcaggtgttctcatggggtctgggctcagatgggcagttgggcctgcataac
tttgaagaatgtgttcgtgtgcctagaaatatcaagagtttgtcagaagtacacattgct
caggtagcctgtgggtattggcattcacatgcactttcaagagggggccacgtcttctcc
tggggccagaatcaatatggacaacttgggctcggaatagatggacagagcatttccacg
ccccaaataattcagtctctgcagggcattccttttaatcagatatcagcaggtggtgct
cacagctttgcgctcactctctcaggagcggtgttcggttgggggcgcaacaagtttggt
cagctgggtctcaatgactgcaatgatcgtttttccccagccctgctgaagtcccttaga
tcccagagagtgatttacatctcctgtggagaagatcacacagcagcactgactaaggaa
ggaggtgtgttcacatttggagcaggaggatacggacaacttggacataactctacaaac
catgagatcaacccgaggaaagtgtttgagctcatgggaaatgtagtcacgcagatttca
tgtggaaggcagcacacgctagctttcacaccctcctgtgggaagatggactcatttggg
cttgctggtaacgggcagcttggtactcgctccacttgcaacagaaaaagtcctgccact
gtcaaaggcccctgggtagcctccaaatatacagactcggagccgtgctgttatgtcaag
aggatttacgccggaggagaccagagctttgctcattattgcactaccaataaactccag
aacatggatgacgtgaggatacaagatccccacagaaagatttgcaccttgaacgaggat
atcatacacaagtggtgtacctactccccaggaagactccccctggagatctccaatgag
attgacctcgtgttctcctcagcaagctgcctcaatggatcttttctgtcaaccagccat
ccagatcactacagtaccagcagcaaatgttcaggggtggatatgaacatggctcgcctc
ctgttgcacagagtggtccaacgaggtcaccatgagcttactcagcagattgcagccagt
ctcgagaagaacctcattcccagactaagcaactctcctccagacattgaagccctgaga
ctctacctcactcttccagaatgcgctctcttcagggaccgaaatagttacgtgaccatc
gcgatcccgtttgccaaatccctcctcagtctgaaagaggctccactgaaggttctagga
aactggtggtctacatttgagcccccagtcttccagcggctggttgagttgtacaaggaa
gtggtggtgtatctgctgcagatgcacaagatgggcattccttcggtagagcagaggatt
ttcacttgtttcctggacacgtccctccgactcctggagatcctgcacacggtgagtgag
agagcaggtcacatcattcagtacgatacattctacatccatgagttggatgacctaata
gacatcagaaatgactacatcacatggattcagaggcagatgtacccattgggtcatgat
ggtgtggtgactctgtgcaggtatccctttgtgtttgatgcccaagcaaagaccacgctg
cttcagactgatgccatcatacagatgcagatggcagtggaccaggcacagatgcaaaac
ttcagttccatgttcctgccagcggttgaatccgtcaacccgtgcctcatcctcattgtt
cggagagaaaatattgttggagacaccatggaagtcctcaggaaatcaaagaatgtcgac
tacaagaaaccactcaaggtgatcttcgtgggagaagaggcggtcgatgcaggaggcgtg
agaaaggagttgttcctcctgatcatgaaagagctgctggatcccaaatatgggatgttt
cgttactacgaggagtccaggctcatatggttttcaaacaagacctttgaggacattgac
ttgttcaacctcatcggggtaatctgtggtctggccatctacaatctcacgatagtggaa
ctcaacttccctgtggccctttataagaagctgctgaagaggaagccgacactagatgac
ctgaaagagctaatgccagatgtgggaaggagtctgcagcagttactcgactacacagaa
gacgacctcgaggagaccttctgcttaaacttcacaatcacagaggaaaactatggtgcc
atagaggtcttggagctggtacggaacggcgaagacatcactgtcgataaatcaaacagg
caggactttgtctatgcatacgtagactatgttttcaacacatccgtggccccgctgttc
gagtgcttctatgcaggcttccacaaggtgtgcggtggaaaagttctcgagctgttccag
ccaaatgaactgcaagccatggtcattggcaacaccaactacgactggacggagctcgaa
aagagtactgaatacaaaggggagtactggacagaccatcccaccatcaggctcttctgg
gaggtgttccaccgtcttcctttagaggagaaaaagcaattcctcttgttcctcacagga
agtgaccgcatacccattttgggcatgaaaagcctgaagctggtgatccagcccaccagc
ggaggggagcaatacttacctgtggcccacacctgcttcaacctgctggacctacccaag
tacaggagtttggaaatactccgggagaagcttctacaagctatagattacaatcaaggc
tttaatcttgcctga
DBGET
integrated database retrieval system
