Cyclopterus lumpus (lumpfish): 117743930
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Entry
117743930 CDS
T09199
Symbol
nfkb2
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117743930 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
117743930 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117743930 (nfkb2)
Transcription factors [BR:
clum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
117743930 (nfkb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_5
Ank_4
Death
CIS_TMP
Motif
Other DBs
NCBI-GeneID:
117743930
NCBI-ProteinID:
XP_034407798
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All DBs
Position
15:891138..917882
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AA seq
899 aa
AA seq
DB search
MAGALRMSEAQFINVYDNDLQMNLMQYDYIPPVDIKTEPYIPETAHGPYIQIIEEPKQRG
FRFRYECEGPSHGGLPGASSEKNRRTYPTVKVNNYVGHARVEVQLVSHTDPPRVHAHSLV
GRHCTESGTCTLDIGPNDLTASFSNLGILHVTKKGVVEVLSRRLRDERKRQKGAHLHLTD
SEETSMVKEAKELGKVMDLNIVRLKFTAYLQDSNGGFTRGLKPVVSNPIYDSKSPNASNL
KISRMDKTCGTVLGGDEIFLLCDKVQKDDIEIRFYEEDDEGGWEAFGDFSPTDVHKQYAI
VFKTPPYHSAEIERPVTVFLQLKRKKAGDSSDPKQFTYIPQVQDKEEVLRKKQKPLPHYE
PWRGGGGRGGGAGGFGGGGFQFNQQMNGGGGGGGGGGGGGGGGGGGGGGGFFTEGFTGFG
GGTQMSGSTPQTGVTQQQTDGQSGSPLQQQLFHLAAALHSRASQNARQTAAALLQYCSTG
DARVLLAIQRHLCGVQDGNGDTPLHLAIIHQQTGVIQQLIHTLLSSQQQNILNTANYLQQ
TPLHLAVITRQVKVVEVLLRGGADPSLLDNDGRSPLHLAALAGDTATLRPLLAHLGERYA
HLVNTPDFHGLHPLHLAVRRDGERCLRLLVEGGAKINAPEQKSGNTALHLAVRENLFKVA
CTLITELQADVNAVSFGGNAPLHLAAGLGSPTFCSMLVAAGADRNVENDEPLFFSSSSDE
EQDEDEPIREREAGSQPINPRKRPAGGHTPLDLTKCQKVRNLLSSGQSPKSSLHGSKRKK
PSSTEELQVDEDTLSRLVELLSVGDVPWRTLAEKLGMMTLTHLYLDSPAPCHQLLQHYQL
GGGPVEGLVEALQALGLSEGVRLLRNNELRDDKHSTDATVDSGFGSQPIDDDEPPVANQ
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagctctcaggatgagtgaagctcagttcatcaacgtctacgacaacgacctg
cagatgaacttgatgcagtacgactacattcctccagtggacataaagacggagccctac
atacctgagacagctcacggtccttacatccagatcatcgaggagcccaaacagaggggc
ttccggttccgttatgagtgcgagggcccgtcccacggggggctcccaggggcctccagc
gagaagaaccggaggacgtacccgaccgtgaaggtcaataactacgtgggccacgcccgg
gtggaggtccagctggtgtcccacaccgatccccctcgtgtccacgcccacagtctggtg
ggacgccactgcaccgagagcggcacctgtacgctggacatcggccccaacgacctcacc
gcctcattcagtaacctggggatcctccacgtgaccaagaaaggtgtggtagaggttctg
agccggagactcagggacgagaggaagagacagaaaggagctcaccttcacctcacagat
tcagaggaaacctccatggtgaaggaggccaaggagctgggcaaggtgatggacctgaac
atcgtgaggttaaagttcaccgcctacctccaggacagcaacgggggcttcacccggggg
ctgaaacccgtcgtctccaaccccatctacgacagcaagtcaccgaacgcctccaacctg
aagatctctcggatggacaagacgtgcgggacggtgctcggcggagacgagatcttcctg
ctgtgtgacaaagtccagaaagatgacatcgagatccgcttctacgaggaggacgacgag
ggaggctgggaggcgttcggggacttctcacctaccgacgtccacaagcagtacgccatc
gtgttcaaaacgccgccctatcacagcgcagagatcgagaggcccgtcaccgtcttcctg
cagctgaagaggaaaaaggccggcgacagcagcgaccccaaacagttcacctacatcccc
caggtccaagacaaagaggaggtgctgaggaagaagcagaagccactgcctcactatgag
ccctggagaggaggaggaggaagaggtggaggagcgggggggtttggaggaggaggattc
cagttcaaccagcagatgaatggaggaggaggaggaggaggaggaggaggaggaggagga
ggaggaggaggaggaggaggaggaggaggtttcttcactgaaggcttcacaggcttcggg
ggagggacccagatgtcaggctccacccctcagacaggggttacccagcaacagaccgac
ggacagagtggctcgccactacagcagcagctgtttcatctcgccgccgccctccacagc
agagcctctcagaatgccagacagacggccgctgccctgctgcagtactgcagcaccggg
gacgctcgggtccttctggcaatccagagacacctctgtggcgtccaggatggcaacgga
gacactcctttgcacctcgccatcatccatcagcagacaggtgtgatccagcaactgatc
cacactctgctcagcagccagcagcaaaacatcctcaacacagctaactacctccaacag
actcctctccacctggcggtgatcacccggcaggtgaaggtggtggaggtgctgctgagg
gggggggccgaccccagcctgctggacaacgacggtcgcagtcccctccacctggcggcg
ctggccggagacaccgccacgctccgccccctgctggctcacctgggagaacgatacgcc
cacctggtcaacacccctgacttccacggtctccatcctctccacctggccgtgaggagg
gacggagagcgctgtctccgcctcctggtggagggcggagccaaaatcaacgcacctgag
cagaagagtggaaacaccgccctccacctggcagtcagggaaaacctgttcaaggtggcc
tgcacgctcatcacagagttgcaggcggacgtcaacgcggtctcgttcgggggcaacgct
ccgctccacctggctgccggtctcggctccccgaccttctgctccatgctcgtcgctgca
ggcgctgatagaaacgtggagaacgacgagccgctcttcttcagctcctcttcagacgaa
gagcaggacgaagatgaaccaatcagagagcgggaggccggctcgcagccaatcaacccc
cgcaagagacctgcaggaggccacacccctctggacctcaccaagtgccaaaaggtgagg
aacctgttgagcagcggtcagagtcctaagtcgagtcttcacggcagtaagaggaagaag
ccgagcagcactgaagagctgcaggtggacgaggacacgctgtcccggctggtggagctg
ctgagcgtgggggacgtcccctggaggacactagcagagaagctggggatgatgacgctg
actcacctgtacctggacagcccggcgccttgtcaccagctgctgcagcactaccagctg
ggtggaggtccggttgaaggtctggttgaagctctgcaggctctcggtctgtcagaagga
gtccgactgctgagaaacaacgagctacgagacgataaacacagcacagacgccacggtt
gacagcggcttcggcagccagccaatagacgacgacgagccgcctgtggccaatcagtga
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