Cyclopterus lumpus (lumpfish): 117743940
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Entry
117743940 CDS
T09199
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04140
Autophagy - animal
clum04148
Efferocytosis
clum05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117743940 (vps16)
04148 Efferocytosis
117743940 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117743940 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117743940 (vps16)
Membrane trafficking [BR:
clum04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117743940 (vps16)
Hops complex
117743940 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
117743940
NCBI-ProteinID:
XP_034407817
Ensembl:
ENSCLMG00005012176
UniProt:
A0A8C2ZBM1
LinkDB
All DBs
Position
2:complement(68913..83367)
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AA seq
834 aa
AA seq
DB search
MAFITANWNPLGEAFYRKSELYEMCWNLRDGLRDCLVSAAPYGGPIALLREPHKRSPSSR
PQLEIYSASGVGIASFPWKSGPVVHLGWTVSDELLCIQEDGSVLIYDLFGSFKRHFSMGQ
EVVQSQVLEAKVFHSPYGTGVAIVTGSSRFTLATNIDDLKLRRLPEVPGLQGKPSCWVVL
NQERQTKVLLSNGPEIYILDSTSCTAVCPPGLGPQAGSIVHMSVSFRYKYLALFTDSGHL
WTGPSHLQDKMSEVDTKKSTPPKQMVWCRRPKSQQPSVVLMWDRLLMVAGVCNDTIQFPT
EDQCVLVGELDGVRIISSANQELLQEVPLVCQDIFKIASMAPGALLLEAHREYEKSSQKA
DEYLREIKEQSMLGEAVRQCVEAAGHEYNTDTQKSLMRAASFGKCFLTDFSPDLFVSTCR
ELRVLNAVRESSVGLPLTHTQFKQMTLQVLIDRLVYRQFYPLAIEICRYLKIPDYQGVSR
VLKHWASCKVQQKDLSDEAIARTVCLKVGDSPGVSYSHIAAKAYECGRTELAIKLLDFEA
RSGEQVPLLLKMKRSQLALSKAVESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKLQEQETLKDLYNQDDDHQELGNYYVTASYREKRLENRLSLLQSAVDEYNKAKNE
FSAKATEEEMRLLRFQRKLDDEKGAGLLELSLQATMEALLALGLHKQAEQLYRDFRVPDK
RYWWLKLKSLAEKEEWEELEKFSKSKKSPIGYLAFVDVCMKSNNTYEAKKYVSKVTPEQR
VKAHLAISDLEGAADAATERRNESEMAAVLSRCSTSDRLLIDRLNRARACAVKK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcatcacggccaactggaacccgctcggtgaagcgttttaccgtaaaagtgag
ctgtatgaaatgtgttggaacctgagggacggactccgagactgtctggtgtctgcagct
ccttatgggggtccaatagctctcctaagagaacctcacaaacgttctcccagttctcgt
cctcagttggagatctattctgcatcgggagtcggcatcgccagcttcccgtggaagagt
ggcccggtggtccacttgggttggacggtcagtgatgagctgttgtgtattcaggaggac
ggatcagttctgatctacgatctgtttggatctttcaagagacacttcagtatgggacag
gaagtggtccagagtcaggtcttagaagccaaagtgttccactctccttatggaacaggc
gtcgccatcgtaacgggttcctcacgcttcaccttggcaaccaacattgatgacctgaag
cttcggaggttacctgaagtcccgggtctgcaggggaagccgtcctgctgggtcgtcctc
aaccaggaaagacagacaaaagtactgctgtccaacggacctgagatctacatcctggac
agcacgtcctgcactgctgtgtgtcctccaggtctcggtcctcaggctggcagtatcgtc
cacatgtctgtgtctttcagatataaatacctggctctcttcactgactctggacacctg
tggacaggcccctcccatctccaggacaaaatgagtgaagtcgacactaaaaagtcaaca
cctcccaaacagatggtctggtgtcgcagaccaaagagtcagcagccgtctgtggtgttg
atgtgggacagactgctcatggtggccggagtctgtaacgacacaatccagttccccaca
gaggaccagtgtgtgttggtcggagagctggacggagttcgcattattagctcagccaat
caggagctgcttcaggaggttcctctggtctgtcaggacatcttcaaaatcgcttccatg
gctcctggagctctgctgctggaggcccaccgggagtacgagaagtcaagtcagaaggct
gatgagtacctgagagagatcaaggagcaaagcatgctgggagaagcagttcgacagtgc
gtggaggcagcaggacacgaatacaacacagacacccagaagtccctgatgagagccgcg
tcctttgggaagtgcttcctgaccgacttcagtcccgacctgttcgtgtcgacctgcaga
gaactccgggtgctgaacgccgtcagagagagcagcgtggggctgccactcactcacacg
caattcaaacagatgactctacaggtgctaatcgacaggttggtgtatcgacagttttac
cccttagcaatagaaatatgtcgttacctgaagatcccagattaccagggagtcagcaga
gtcctcaaacactgggcttcatgcaaggtgcagcagaaggacctatcggacgaggctatt
gcccgaacggtgtgtctcaaggtgggagactcacctggtgtgtcttactctcacatcgca
gctaaagcttatgaatgtggacgcactgagctcgccatcaagttgttggactttgaggct
cgctctggagagcaggttcctctgctgttaaagatgaagaggagtcagctggctcttagt
aaagctgtggagagcggagacactgacctagtttacaccgtggtgacgtacctgaagaac
gagatgaacaggggagacttcttcatgactctgagaaaccaaccggtcgcactgagcctc
tacagacagttctgtaaactacaggaacaagaaactctgaaggacctttataaccaggac
gatgaccaccaggaactcggcaactactacgtcactgccagttacagagaaaagaggttg
gagaaccgtctgtctctgctgcagagtgctgtggacgaatacaacaaagccaagaacgag
ttctctgcaaaggccacagaggaagagatgcgtcttctccgtttccaacgcaaacttgat
gatgagaaaggggcggggctactggaactatctctacaggcgaccatggaggctctgctg
gctttaggactccacaaacaagcagaacaactgtacagagacttcagagtacctgacaaa
aggtactggtggttaaagctgaagtctctggcagagaaagaggagtgggaggagttggag
aagttctcaaagagcaagaagtctccgattggctacctggcgtttgttgacgtttgcatg
aagagtaacaacacgtacgaagccaagaagtacgtctccaaggtaacgcctgagcagagg
gtcaaggctcacctggccatcagtgatctggagggagctgcggacgccgcaaccgagaga
aggaatgaatcggagatggccgcggtcctctcgagatgctccacctccgaccgcctgttg
attgacaggttgaaccgagccagagcgtgcgctgtcaaaaagtga
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