Cyclopterus lumpus (lumpfish): 117743968
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Entry
117743968 CDS
T09199
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117743968
Membrane trafficking [BR:
clum04131
]
Protein recycling
Others
Others
117743968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
BiPBP_C
AIF-1
Motif
Other DBs
NCBI-GeneID:
117743968
NCBI-ProteinID:
XP_034407865
Ensembl:
ENSCLMG00005021350
LinkDB
All DBs
Position
15:9687996..9728264
Genome browser
AA seq
1248 aa
AA seq
DB search
METRLGYCLLIIFSKWIWLFTLTSIPGGTKAELRCIPSCQLPLIKALPRELSELDLANFG
EAPTKDLVGYTDRSPGTKPADGGGDEKHNVAELTASEESSSKVHPRSEGNNASCLQKDAL
KDRHKLSDSKVSPGSAPSPDEGNVTDNRTDDGEDNNDENGAQVDVTMGLDEETDVAVWRR
TRSARSAETWSGFRPEDGEDASFSDKEEFELTSSTFALTGDTAHNQAMVHWSGQNSSVIL
MLTKYYDFNSGRVTESSLWRSTDYGTTYEKLNEKVGPKTILSYLYVSPNNKRKIMLLTDP
EVESSLLISLDEGATYQKHSLAFDILSLLFHPEQEDWILAYSHDQKLYVSVEFGKRWQLV
HDGVIPNRFYWSRIGLDKEQGMIHLEISISDGRSQYITCKLQNCSDGNKGKPFPGFIIPN
SLVVQDEYVFIQVPVGGQSVHYVSYKRNAFYPMKLPKYTLPKDLQIISTDDNQVVAAIQD
WHQNDSYNLYMSESRGLFFTLMLENAVSSGGPEGNIMIDLYEVAGIKGVFLSNKVVENQV
KTYITYNKGRDWRLLQAPTTDLQGNKVYCEQPYCSLHLHLHVSENPYTSGNIVSKDSAPG
VIIASGVVGPELTSNNVSIFITSDAGNSWREVFQEEYSVFFLNQGGSLVAIRHTPLPIRH
IWLSFDEGRNWDKYSFTSSPLYVDGVLGEPGEDTLIMTIFGHFSHRSEWQLVKTDFRSIF
QHRCTSEDYMTWQLHNEGDVCIMGMKRIFQKLKANVLCVKARNQYISQMSDSCPCTEADF
ECDYGFIRQIDGSCTPAFWFVPTPTSRDCITGDSFLNTTGYRRALSNNCTEGTLLKYSPR
RQKCPSQAPRGLQLFTSEGTLVATLERNVTFLVFLEEGLGSMTSITVDFGDGTAISYVNI
SSIDDGVKHIYSKVGIYQVSATATNTLGSDRVMLYLHVSCQLEQVQLSAPSVVVKNKAVN
LSTVLRPSNVGTVSYYWWFNNKTEPVVTLDGAMSFTFSKEGSHTVTVQASVGNIVHEDQI
TVAVYDYFRSHVLGFSSNLDELNPGVSEWREDISRVVKSNMVQVTGINEEQLLVTVLPGL
PTTAEIFIVPEKKPRDGDMDEKWAHLDQLAQVLLSALNQDLIQFTLKPGVQVNVYATQLS
PAPLVDSSDSGHSGTAVIMLVSVVLMGLAVFVIYKFKRKIPGINTYTAEQPDKEQEVIPT
VTSIDVPNPEGDKLTSLDHVDVQLNSKGRGYLPSHTAIKLSDEAPRVF
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggagacgcgcctcggttactgccttttgatcattttctctaagtggatttggctcttc
accctaacttccatcccgggcggaacgaaagcggagctaaggtgcatcccttcgtgccag
ctgccgctaatcaaagctcttccccgggagctctcggagctggatttggctaattttggt
gaggcaccaactaaagatctcgttggatatacggatcggtcaccgggcaccaaacccgcc
gacggaggaggagacgaaaagcacaacgttgcagaattaacggcgagtgaagaaagttcg
tccaaagtgcacccgcggtctgagggaaataacgcaagttgtctccagaaggacgcgttg
aaagatcggcataaactttccgactcgaaagtgtctcctggaagtgctccttcacccgac
gagggtaacgtgaccgacaatagaaccgatgatggagaagataacaacgatgaaaatggg
gctcaggttgatgtgacaatgggcctggacgaggagacggatgtggccgtttggagacgt
acacggagcgcgaggagcgcagagacttggtccggattccgaccggaggacggggaggac
gcttcgttttcagacaaggaggagtttgagctcacaagttcaacatttgcactcaccggg
gacacggctcataaccaggcgatggtgcactggtccggacaaaacagcagcgtgatcctc
atgttgacaaagtactatgacttcaactctggcagagtaacagagagttctttatggagg
tcaactgattatgggaccacatatgagaagcttaatgagaaagtcgggccgaaaaccatc
ctgagctacttgtacgtgagtccaaacaacaaaaggaagatcatgttacttaccgacccg
gaggtggagagcagcctgctcattagccttgacgagggggcgacctatcagaaacacagc
ttagcctttgatatcctcagcctgctttttcaccccgagcaggaggactggatcctggct
tacagccacgaccaaaagctctatgtctctgttgaatttgggaagagatggcagctcgtg
cacgacggcgtcatccccaacagattctactggtccagaataggtttagacaaagagcaa
ggaatgattcacctggagatcagcatctctgatggacggtcacagtacatcacgtgtaaa
cttcagaattgctctgatggcaacaagggcaagcctttccctggatttatcatccctaat
tccctggtggttcaggatgaatacgttttcatccaggtgccagtaggtggtcagtctgtc
cattatgtgtcctataaaagaaatgctttctacccaatgaagcttcccaagtacactctg
ccaaaggacttgcagataataagcacagatgacaaccaggtggtggcagcgattcaggac
tggcaccagaatgactcctacaacctgtacatgtctgagtccagagggctgttcttcacc
ttgatgctggagaacgctgtgagcagtggaggaccggagggcaacatcatgatagacctc
tatgaggttgccgggattaaaggggtgttcctgtcaaataaagttgtggagaaccaggtg
aaaacttatatcacatacaacaaggggagagactggcgtcttcttcaggctccaacaacc
gatctccagggaaacaaggtctattgtgaacaaccttactgttcgttacatctacacctt
cacgtgtcagagaacccttacacctcgggaaacatcgtcagcaaagactcagctccaggg
gttataatagcgtcaggtgtagttggacctgagctgaccagtaataatgtcagtattttc
atcacgtctgatgctggaaacagctggagagaggtttttcaggaagagtacagcgtgttt
ttcctgaatcaaggaggatctctggtggccatccgacacacacctcttccaattagacac
atttggctgagttttgatgagggcagaaactgggacaaatacagcttcacctcctctcca
ctctatgtcgatggggtgctgggagagcctggagaggacaccctcataatgacaatattc
ggtcatttcagtcatcgatctgagtggcagcttgtcaaaactgacttccggtccattttt
caacatcgctgcacatctgaagattacatgacatggcagttacacaatgagggcgatgtg
tgcatcatgggaatgaagagaatctttcaaaaactgaaagcaaacgttctatgtgtcaag
gccagaaatcagtatatttcccagatgtcagattcctgcccatgcacagaggcagacttt
gagtgcgactatgggtttataaggcagattgatgggagctgcactccggctttctggttc
gtccctacgccaacatccagagactgcatcaccggggacagcttcctcaacaccacggga
tatcgccgggctttgtctaacaactgcactgagggaacactgttgaagtacagccccagg
cgacaaaagtgtcccagtcaggcccccaggggcctccaactcttcaccagtgaggggaca
ctggtagcaaccctggagaggaatgtcactttcttggtctttctggaagagggtctcggc
tccatgacaagtataacagtggactttggcgacggcacagcgatatcgtatgttaacatc
agctccatcgatgacggggtcaagcatatctacagtaaagttggcatctatcaggtttct
gcaacagcgaccaacactctgggctctgatagggtgatgctctatctccacgtctcctgt
caacttgaacaggtccagctctcggctccttcagtggtcgtcaagaacaaagcagtaaac
ctctccacggtgttacggcccagcaatgtgggaacagtcagttattactggtggtttaat
aacaaaacagagcccgttgttacgctggacggagcgatgtccttcactttctccaaggag
ggaagtcacaccgtcactgttcaggcttcggttggcaatattgtccatgaggaccaaatt
actgtggctgtttatgattattttcggtcacacgttttgggcttttcttctaatttggac
gagctgaaccccggcgtgtctgagtggagagaggacatcagccgagtggtgaagagcaac
atggttcaggtcacaggaataaatgaggagcagctcctggtcacagtgctcccaggttta
ccaacaacagcagagattttcatcgttccggaaaagaagccgagagacggggacatggat
gaaaagtgggcacacctggatcagcttgctcaggttctgctaagtgctttgaaccaagac
ctcatccagttcacactcaaaccgggggtgcaggtgaatgtgtacgccacgcagctgtct
ccagctcctcttgtggacagcagtgatagtggtcacagcggaactgcagtcatcatgctt
gtgtcagtcgtactgatgggcttggctgtctttgtaatatataaatttaaaaggaagatc
ccgggcatcaacacatatacagcagagcagcctgacaaagaacaagaggtcatcccgaca
gtgacctccatagacgtcccaaaccctgagggggacaagctgacctcactggatcatgtc
gatgtacagttgaactcaaaaggcagaggctacctgccatctcacactgccatcaagctc
tctgatgaagcgccccgtgtgttttaa
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