Cyclopterus lumpus (lumpfish): 117744143
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Entry
117744143 CDS
T09199
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117744143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117744143
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117744143
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117744143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
TRIM_CC
zf-C3HC4_4
zf-C3HC4
PRY
zf-C3HC4_2
zf-C3HC4_3
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
zf-RING_2
zf-RING_5
fn3_4
NDNF
Hydro_N_hd
Motif
Other DBs
NCBI-GeneID:
117744143
NCBI-ProteinID:
XP_034408163
Ensembl:
ENSCLMG00005003963
LinkDB
All DBs
Position
2:complement(8597302..8626528)
Genome browser
AA seq
687 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCATNEPVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGLPLPLPAPHSGPNSPGEEGSDRLAL
VPVSAAMSSPVVPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTGHR
LIEPMPDSHLRGLQCLEHEEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEKLK
QALDSNLTNLIKRNNELESLMGKLIQTCQHVEVNATRQEGKLLEECDVLIDIIQQRRQII
GNKIKEGKAQRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSINERVS
MATASTQVLIPEIHLTDTFDTVALDFTREKKLLENLDYLTAPNAPCIREELCTASYDTIS
VHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTKYI
FVVKAINQAGRRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHSQE
RFTSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLCRC
NNSWVVRHNSKELAIEPSPHLRRVGVLLDYDAGYVTFYDAVGSQHLHTFHVTFVQPVCPV
FNVWNKCLTILTGLPIPDHLEELEPDN
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctgacctgcccaatctgcctggagctcttcgaagacccg
ctgctgctcccctgcgctcacagcctgtgcttcggctgcgcccatcgcatcctcatctcc
cactgtgccaccaacgaacccgttcagagcatcggcgccttccagtgccccacctgtaga
tatgtcatatccctgagtccggagcgtggactagaaggacttaagagaaacgtgaccctg
cagaacattatcgacagagttcagcgggcctcatcttcggccgggctccctctgccgctg
ccggcgccccacagcgggcccaactctcccggcgaggaagggagcgaccgtctggcgctg
gtcccagtcagcgccgccatgtccagtccggtcgtgcccccggaaccggtgcagtgccag
ttctgcgagcaggacccgccgcaggacgccgtcaagacgtgcgtgacgtgcgaggtgtcg
tactgcgaggagtgcctgcgggcgacgcacccgaacaagaagccgttcacgggccaccgg
ctcatcgagcccatgccggactcccacctgcgggggctccagtgcctggagcacgaggag
gagaaggtgaacatgtactgcgtcactgacgaccagctgatctgctcgctgtgcaagctg
gtggggaggcacagggaccaccaggtggcagcgctgagcgaccgctacgagaaactcaag
caagccctggactccaacctgaccaacttgatcaagaggaacaacgagctggagtccctg
atgggcaaactgatccagacttgtcaacatgtggaggtgaacgcgacccgccaagagggc
aagctgctggaggagtgcgacgtcctgattgacatcatccagcagcggaggcagatcatc
ggcaacaagatcaaggaggggaaggcacaaaggattcggaagctcgcccaacagatctcc
aactgcaagcagtgcatcgagaggtcctcggccctcatcacgcaggccgatcagacgctg
aaggaaaccgatcacgcccgcttcctgcagaccgccaagagcatcaacgagagggtttcc
atggcgactgcatcaacccaagtgctgatccccgagatacacctgacggacaccttcgac
acggtcgccctggacttcaccagagagaagaagttgctggagaatctggattacctgaca
gctccgaacgctccgtgcatcagggaagagttgtgcacggcttcgtatgacaccatctcc
gtccactggacgtctgatgacgagttcacggtggtgtcctatgagctccagtacgccatc
ttcactgggcagtccaacatcgccagtctgtgcaactcattggagagctggatgattgtt
cccaacatcaagcagaaccactacacggtgcacggtctgcagagcggcaccaagtatatc
tttgtcgtcaaggccatcaaccaagcgggaagaaggagcagtgagccggggactctgaag
accaacagccagccgttcaagctggaccctaaatctgcccacaagaagctgaaggtgtcc
cacgataacctgacggtggagcgggacgaaaccacgtccaagaaaggccacagccaggag
cgcttcaccagccagagcagctacggcgtggtgggcaatgtctacatcgacagcggccgc
cactactgggaggctttaatcggagggagcacatggtacgctgtcggtattgcctataaa
tcggcccccaagcacgagtggatcggcaagaactcggcgtcctgggtgctctgccgctgc
aacaactcctgggtggtgcgccacaacagcaaagagctggccatcgagccctcgccccac
ctgcggcgcgtcggggtcctgctggactacgacgccggctacgtgaccttctacgacgcc
gtgggctcccagcacctgcacacgttccacgtgaccttcgtccagcccgtgtgtcccgtg
ttcaacgtgtggaacaagtgtctgacgattctcaccggcctccccatcccggaccatctg
gaggaactggagcccgacaactga
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