Cyclopterus lumpus (lumpfish): 117744328
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Entry
117744328 CDS
T09199
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
117744328
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
clum02000
]
117744328
Transporters [BR:
clum02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
117744328
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF
DUF373
Motif
Other DBs
NCBI-GeneID:
117744328
NCBI-ProteinID:
XP_034408419
Ensembl:
ENSCLMG00005005055
LinkDB
All DBs
Position
15:complement(21065252..21082498)
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AA seq
559 aa
AA seq
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MKTRKREQWRKKREYILAAAGNVVGLGNVWRFPYLCYKNGGGVFLLPYCFFAVLCGVPLF
LMETVIGQYTQEGTITCWTKLCPLAQGAGYCTIVIQLYARFYIIILAWALLYFFYCFRDP
LPWATCNNPWNTDRCVDFTSANWTAIHGGNLTVNWTSGNLSKSSASEFWHRGILSMSGGI
QEVGTVKWDLLLCLLACWVACYCCIWKGVRFTGKVVYFTAMFPYVMLAILLVRGLTLPGA
WQGVVYYLYPDPSRLADFQVWMEACAQVLFSYSAASGTLITLSSYNKFNNNCYKDSLWLC
GLNSATSFIAGFAVFSALGFMAEKQGIPIDMVADSGPGLAFIVFPQAVAMMPLPQLWAVC
FFLMLMLLGLDTLFTGLETIISSMIDMFPGQMRRPWRREIFLFFFCSISFIIQISLTTQG
GVYLFQLIDYYGANGICIVFVSAVQCVAVGWAFGADRMCDAVQLMTGQRPSGYFKLCWRY
FTPLICMVCFFGFFLDHQTLTTSEGYAYPGWAYGLGWAMALSSVAAVPIWAVVKICLTEG
TLRQSPSLVFSVSLHFLSL
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccagaaagagggaacagtggaggaagaaaagagaatacatcctggcagcagca
ggcaatgtggtgggcctgggcaatgtgtggagattcccctacctgtgctacaagaatgga
ggaggtgtcttcctgttgccttactgtttctttgctgtgctgtgtggcgtgccactcttc
ctgatggagactgtgattggtcagtacacacaggagggcaccatcacctgctggaccaag
ctctgcccgctggcacagggggccggctattgtaccatcgtgatccagctatatgccaga
ttctatatcatcatcctggcctgggccctcctctacttcttctattgtttcagagaccct
ctgccctgggccacctgcaacaatccctggaacacagatcgatgtgtggacttcacctct
gcgaactggactgcaatacacgggggcaacctgacagtaaactggacatctggaaatctc
tccaagtcatcggcctctgagttctggcatagaggaattctgtccatgtctgggggaata
caggaggtcggcacagtgaagtgggatctgctgctgtgtctcctggcctgctgggtggcc
tgctactgctgtatctggaaaggggtccgtttcacagggaaggttgtgtatttcacggcg
atgttcccttatgtgatgctggccatcctgctggtcagggggttgacgctgccaggagcc
tggcagggcgtggtctactacctgtatccagatccttctcgcctggcagactttcaggtg
tggatggaggcttgcgctcaggtcctcttctcctatagtgctgcatcaggaaccttgatc
acactgagcagctacaacaaattcaacaacaactgttacaaggacagtctgtggctgtgt
gggctcaatagcgccaccagcttcatcgccggcttcgcagtcttctcggctctgggcttc
atggccgaaaaacagggaatccccatcgacatggtggctgattcaggtcctgggcttgcg
ttcattgtatttcctcaggctgttgccatgatgcccctgcctcagctgtgggccgtctgc
tttttcctgatgctcatgcttctgggactggacacactgtttacaggtctggaaactatc
atatcgtccatgattgacatgttcccgggacagatgcgcagaccctggcgcagagaaatc
ttcctctttttcttctgctccatcagcttcatcatacagatctctctcaccactcagggc
ggagtgtacctcttccagctgattgactactatggtgccaatggaatatgtatagtattt
gtatctgcggtccagtgtgtggctgttggctgggcctttggggctgaccggatgtgtgac
gcagtgcaacttatgacaggacagaggccgtcgggttatttcaaactgtgctggcgctac
ttcacccctctgatctgcatggtttgcttcttcggcttcttcctggaccaccagaccctg
acaactagtgagggctatgcgtacccaggctgggcctacggtctgggctgggccatggcc
ctctcctccgtggccgcagtacccatctgggctgtcgtcaagatctgcctcacagagggc
accctcagacagtccccgtctcttgtgttctctgtttccctgcacttcctgtccctgtga
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