Cyclopterus lumpus (lumpfish): 117744380
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Entry
117744380 CDS
T09199
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117744380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117744380
03016 Transfer RNA biogenesis [BR:
clum03016
]
117744380
Enzymes [BR:
clum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
117744380
Messenger RNA biogenesis [BR:
clum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
117744380
Transfer RNA biogenesis [BR:
clum03016
]
Prokaryotic type
tRNA degradation factors
117744380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
KH_KRR1_2nd
Motif
Other DBs
NCBI-GeneID:
117744380
NCBI-ProteinID:
XP_034408500
Ensembl:
ENSCLMG00005022352
LinkDB
All DBs
Position
15
Genome browser
AA seq
768 aa
AA seq
DB search
MRYLLSLGHSFARRHVRLCHHSVYSNHTNPRRLVVDLGEKKLEISSGRFARFADGSAVVQ
LGDTSVMVTAVSKTKPSPSQFMPLVVDYKQKAAAAGRIPTNHLRRELGSTDNEILTSRLI
DRSIRPLFPHGYFYDTQVVCNLLAVDGVNDPDVLAINAASAALSLSDIPWHGPIGAVRVG
MVDGEMLINPTRTEMTSSSLNLIVAAGPGSQVVMIEASAENVLQQDFCHAVKVGVKHAMQ
IILALQQMAREQKITKRTPVKIFSAPTDMVESVRQSASKRIYGVFTDYTHDKISRDDAIN
KVRLETEEDLKERFPQAEHFEIMESFNTVSKEVFRNLVLNEYKRCDGRELTALRNISCAV
DLFKPLHGSALFQRGQTQVLASVTFDSLESSIKADIITTALSGIKSKNFMLHYEFPPYAT
NEIGKMGGINRRALGHGALAEKALRPVIPKDFPFTIRVTAEVLESNGSSSMASACGGSLA
LMDAGVPISSAVAGVAVGLISKANPEKPAEIQDYRLLTDILGIEDYLGDMDFKLAGTNKG
ITALQVDVKIPGLPLKVVMEAIQQGTVAKREILGIMNKCTAKPRETRKENGPVIENVRVP
VSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQDFISEVCKDDQE
QQLDFGAIYTATIIEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGLEVGQQIQV
KYFGRDPTDGRMRLSRKVLQSPAATVVRTLSEKQSISMGSSDGPSTDL
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgaggtatttactcagtctggggcactcgttcgcccgccgccacgtccgtttatgtcac
cacagtgtttacagcaaccatacaaatccacgaaggctggtcgtggaccttggggagaag
aaacttgagatctcttcagggaggtttgctagatttgctgatgggtctgctgtagtacag
ctgggcgatacgtctgtgatggtgacggctgtgagcaaaaccaaaccttctccgtctcag
ttcatgcctcttgtggtggactacaaacagaaagcagcggctgccggtcgaatccccacg
aaccatttgcggcgagagttgggctccactgacaacgagatcctcaccagcagactcata
gacaggtcgatcagaccgctgttccctcacggctacttttacgacactcaggtcgtttgt
aacctgctggcagttgacggtgtcaatgatccagatgtgctggctattaatgcagcttcc
gcagctctgtccctgtctgacatcccctggcatggacccataggtgccgtgcgcgtgggc
atggtcgacggagagatgctgatcaaccccaccaggacggagatgacgtccagcagcctg
aacctcattgtggccgctggccccggcagtcaagtggtgatgatcgaggcgtcggctgag
aacgtgctgcagcaggacttttgccacgcggtgaaggtgggagtaaaacacgccatgcag
atcatactcgccctccagcagatggcgcgagagcagaagatcaccaagcgcaccccggtc
aagatcttctccgccccgactgacatggtggaatctgttcggcagtcagcttccaagagg
atctatggcgttttcactgattacactcacgataagatttcaagagatgacgcaatcaac
aaagtccgactggaaacggaagaggacctaaaagaaagattccctcaagctgagcacttt
gagatcatggaatccttcaacactgtgagcaaagaggtcttccgcaatttagtgctaaat
gagtacaagagatgtgatgggagggagctgactgctttaaggaacatttcctgtgctgtg
gacctcttcaaaccgctgcatggctccgccctcttccagagaggacaaacacaggtgctg
gccagtgtcacatttgattccctggaatccagtatcaaagccgatattatcaccacagct
ttgagtggcatcaaatccaaaaatttcatgcttcattatgagttccctccgtatgcgacc
aatgagattggaaagatgggaggcatcaaccggagagcgctcggacatggggccctggct
gagaaagctctgagaccagtcatccctaaagacttccctttcactatccgggtcaccgct
gaggtgctcgagtcaaacggatcctcctcaatggcttcagcatgtggtggcagcctcgct
ctcatggatgcaggtgttcccatctcttctgctgtggcgggtgtagcagttggcctcatc
tccaaggccaacccagagaaacctgctgagatccaagactacagattactcactgatatt
ctgggaatagaagattaccttggagacatggacttcaaattggcaggaacaaacaaaggc
atcactgctttacaggttgacgtgaagatcccaggcctgccgctgaaggtggtcatggag
gctatccaacagggcacagtggcaaagagggagatcctgggcatcatgaacaaatgtaca
gcaaaacccagagagacgaggaaagagaatggacccgttattgaaaatgtgcgggtgccc
gtttccagacgagcacgcttcgtcggtccgggcggctataaccttcgccggttacaagcg
caaacgggcgtgacaataagtcaggtggacgaggagactttctccgtgttcgctccgact
ccaggagccatgaacgaagcccaggacttcatcagtgaagtctgcaaagatgaccaagag
cagcagctggattttggtgcaatctacacggccaccattattgagataagggacattggg
gtgatggtgaaactgtatcccaacatgagtgccgtcctgctgcacaactcgcaactggac
cacaaacggatcaaacacccaagtgctttgggtttagaggtgggccagcagatacaggtc
aagtactttggacgggacccaacagatggcagaatgagactttcgaggaaagtgctccag
tctcccgctgcaaccgttgtcaggactctaagtgagaaacagagcatctccatgggttca
agcgacggcccctccaccgacttgtga
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