Cyclopterus lumpus (lumpfish): 117745016
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Entry
117745016 CDS
T09199
Symbol
rnf115
Name
(RefSeq) E3 ubiquitin-protein ligase RNF115 isoform X1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117745016 (rnf115)
04121 Ubiquitin system [BR:
clum04121
]
117745016 (rnf115)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117745016 (rnf115)
Membrane trafficking [BR:
clum04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
117745016 (rnf115)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117745016 (rnf115)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-rbx1
Zn_ribbon_19
zf-RING_5
zf-Nse
zf-ANAPC11
C1_2
zf-C3HC4_3
HypA
Motif
Other DBs
NCBI-GeneID:
117745016
NCBI-ProteinID:
XP_034408859
Ensembl:
ENSCLMG00005002402
LinkDB
All DBs
Position
16:complement(11041323..11048000)
Genome browser
AA seq
352 aa
AA seq
DB search
MPGWRWTAVFSSWRTDVSVCAGRGKMAEAAAVPPHRFFCHCCKGEVNPKLPEYICPRCDS
GFIEEVTEDSSLLEGVANGIDDAATQFAEVEADLTDFGENWLWHLLLLERPFTADGDTPD
SEPRLPGGRLGGLSDLGGLGGGPIGGSVPAGLGGPMGGLLGAGEHWGPGRPPRLHSQRRY
RSRGSSRPDRSPAVEGIVQQFLAGLFANSGVPGSPPLSWTGMLHSNPGDYAWGQGGLDAV
ITQLLGQLENTGPPPAEKEKISSLPTVNISQEQADCCMECPVCKEDFAVGEPVRQLPCNH
FFHSDCIVPWLEMHDTCPVCRKSLNGEDSSSQPPSESPTLSMDPRTQERWSF
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgccgggctggaggtggacagctgtcttcagttcgtggaggaccgacgtcagtgtttgt
gctggtcgggggaagatggcggaggctgcggctgttccaccgcatcggtttttctgtcac
tgttgtaagggagaagtgaatcctaaactcccggagtacatctgtccaagatgtgactcg
ggattcatagaggaagtaaccgaagattccagtcttctagagggtgtcgctaacgggata
gatgacgctgccacacaatttgcagaggtagaagctgacttgacggattttggagagaat
tggctatggcatctgttgttactggagcggccatttacagcagacggggacacacctgac
tcagaacctcggctccctggagggcgcttggggggtctcagtgacctgggggggttggga
gggggaccaatcggagggtcagtcccagcaggcctagggggacctatgggcggtctactc
ggagccggggagcactggggaccaggacgtccccctcgcttgcacagccagaggagatac
cggtccagaggcagcagtagaccagaccgctcgcctgctgtggaggggattgtacaacag
tttctcgccggcctctttgccaactctggagtccctggctcaccccccctctcatggaca
gggatgctacactctaacccaggcgattacgcctggggacagggagggttagacgccgtg
ataacacagttactaggtcagttggagaacacaggacctcctccagcagagaaagagaag
atctcttctctcccaactgtcaatatctctcaggaacaagcagactgctgtatggaatgt
ccggtgtgcaaagaggacttcgcagtgggagagccagtcagacagctaccctgtaaccac
ttctttcattcagactgtatagtaccatggctggaaatgcatgacacatgtccagtgtgt
aggaagagtttgaacggagaagacagcagcagccagcccccatcagagtcccccaccctc
tccatggacccccgcacacaggagagatggtccttctga
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