Cyclopterus lumpus (lumpfish): 117745093
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Entry
117745093 CDS
T09199
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117745093 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117745093 (smarcc1a)
03036 Chromosome and associated proteins [BR:
clum03036
]
117745093 (smarcc1a)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117745093 (smarcc1a)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117745093 (smarcc1a)
PBAF complex
117745093 (smarcc1a)
GBAF(ncBAF) complex
117745093 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
117745093
NCBI-ProteinID:
XP_034409044
Ensembl:
ENSCLMG00005001577
LinkDB
All DBs
Position
16:complement(3069580..3085097)
Genome browser
AA seq
1123 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGGGTAVGRKKDGGPSTKFWESSETVSQFETVRQWIGKHY
KKSVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAAGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHHIYPTPSQQEEEEWLRPVLRKDKQVLVHWGLSPDSYDTW
VSVSEVDGDVEDPPGTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDDNKKPVSFRQKIFPK
EEESSRTPDRKERKANSASKKRRRSPSPPSTPAESRKKGGKKGNQGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSVSKNANSKKDSENTPVKGGNVADMDDLEDDSVLSGGKD
DEEQGKAEVNRLMDSSEDNVTEQTHHIIIPSYGAWFDYNCIHEIERRALPEFFNGKNKSK
TPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSE
SRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQQPMPNFADKGKDKSIDLQNFGLR
TDLYNKKNFKGKLVNSTRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLR
LPIEDPYMESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTEAPEAEKMDT
DTDSQQADKAELKDEAEKPSESAEKSDKTDAVDKVKKEGSEASEREEESEEGGDAKTTPA
DKEKEESMETSPSEQEKEKEEKAAIGEGDEKRKKLEHDIGEGNIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAF
HMEQLKYAEMKARQQMEQQAAAAAAAAAAAAAQAQGQGQQAPGSGPHSGPPPSGMHPGGP
HHGGPPPSGAMHPGYPPMGHHPMGPHHPGQTGPMGPGQPMPGRMMTGPPSGGPPPGGMAP
MMPPRHPGAPNGMYPGPPAAQAEAVPPLPLGPPAPASGRVADN
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctcaggcggaccggccaccggcccg
gtcggcggcgggaccgcagtgggccgaaagaaagacggcggcccgtctaccaaattctgg
gagagttcagagaccgtgtcccagttcgagacggtgcggcagtggatcggaaagcactac
aagaagtctgtccagaatgactccccatccagtaaatccttggcgggtctggtggtccag
ctgctgcagttccaggaagacgcatttggtcgcagggtcaacaaccctgctcttaccaag
ctacctgccaagtgtttcctggatttcaaggcagctggtgccctctgtcacatcttgggg
tcggtctacaagttcaagagcgagcagggctggcgtagatttgacctgcagaacccttcc
cggatggacaggaacgtggaaatgttcctaaatgtagagaagaacttggtccagaacaac
tgcttgactcgaccaaccgtcttcctgtcgccggacatcgagcagaaacaagccagtaag
ctcaaagacatcatcaaaaggcaccagggctccattacggatgacaagtcgaaggccacc
caccacatttaccccactccatcccaacaagaagaagaagagtggcttcgtcccgtcctg
aggaaagacaagcaggtgctggttcactggggcctctccccagacagctatgatacctgg
gtatccgtcagcgaggtggacggagacgtggaggacccacccggcaccgacagaccatgg
aaggtccacgccaagtgggttttagacacggatgccttcaacgagtggatgaatgaagaa
gactacgaggtggacgacaacaagaagccagtcagcttccgccagaagatcttccccaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaactctgccagcaag
aagaggaggcgctcgccctcgccgcccagcactccggccgagtcccgcaagaagggagga
aagaaggggaaccaggggcctcactggaagcgccggggccacaggggcgaggaggaggac
acggaggaggacatgaccaaggacatggacgactcctcggccggcgccagcatggaggag
ggcagcgtgtccaagaacgccaattcaaagaaagacagtgagaatactccagtgaaagga
gggaatgtggccgatatggatgacctggaggacgactccgtgctgtctggtggaaaggac
gatgaggagcagggcaaagctgaagtcaaccggctgatggactccagcgaggacaacgtg
acggagcagactcaccacatcatcatccccagctacggcgcctggttcgactacaactgc
atccatgagatcgagagaagagccctgcccgagttcttcaacgggaagaacaagtccaaa
actccagagatatacctggcctaccgcaacttcatgatcgacacctatcggctcaaccct
caggagtacctcacctccacctcctgccgcaggaacttgaccggagatgtctgcgccatc
atgagggttcacgccttcttggagcagtggggtttggtgaactaccaggtcgactccgag
agtcgcccgttacccatgggccccccgcccacaccccacttcaccgtgctggctgacacc
ccgtccggcctcatgcccctgaaccacagacccccaccgattcccccccagcagccaatg
cccaacttcgcagacaaaggcaaagacaagtccatcgacctgcagaacttcggccttcgc
accgacctctacaacaagaagaacttcaagggtaaactggtcaactccacccgggattgg
accgagcaggaaaccctcctgctgctggaggccctcgagatgttcaaagacgactggaac
aaagtgtccgagcacatcggttcgcgcacccaggacgagtgcatcttgcacttcctgcgc
cttcccattgaggatccgtacatggagagcaccgaggcctccctgggccctctggcctac
cagcccatccccttcagccagtccggaaaccccgtcatgagcacagtcgccttcctggcc
tccgtggtcgaccccagggtggcgtctgccgccgctcgggcagctttagaggagttctcc
cgtgtgcgcgaggaggtgccggccgagctggtggaggctcacgtgaagaaggtgcaggaa
gcggcccgcagcacagggaaggtggaccccgccttcggcctggagagcagcggcatcgcc
ggcaccgcccccgaagaacccgaaaagactgaagcccccgaggcggagaagatggacacg
gacacggactcccagcaggccgacaaggcggagttgaaggacgaggccgagaagcccagc
gagtccgcggagaagagcgacaagacggacgccgtcgacaaggtgaagaaggaggggtcg
gaggcgtcggagcgcgaggaggagagcgaagagggaggcgacgcaaagacgactccagca
gacaaagagaaggaagagtccatggagacgtcgccctccgagcaggagaaggagaaggag
gagaaggcggctatcggcgagggagacgagaaaaggaagaagctggagcacgacatcgga
gaggggaacatcgccaccgcggccgccgctgcattggcgtcggctgccaccaaggccaag
cacttggcagcggtggaggagaggaagatcaagtccctggtggccctgctggtggagacc
cagatgaagaagctggagatcaagctgaggcacttcgaggagctggagaccatcatggac
cgggagaaagaggcgctggagctccagcggcagcagctcctcaccgagcgccaggcgttc
cacatggagcagctcaaatacgccgagatgaaggcgcggcagcagatggagcagcaagca
gccgccgccgccgccgcggcagcagccgccgccgcccaggctcaagggcaagggcagcag
gctcccggatccgggccccactccgggccgcctccgtcgggcatgcaccccggagggccc
caccacggagggcccccacccagcggtgccatgcaccccggctacccgccgatgggtcac
cacccaatgggcccccaccaccccgggcagacaggaccgatgggacccggccagccgatg
ccgggacgcatgatgaccggcccgccttctggcggccccccccctggtggcatggctccc
atgatgcccccccgccatcccggagctcccaacggcatgtaccccggtcctcctgctgct
caggctgaagcggtgcctccgcttcctctgggtcctccagcgcccgcgagtggacgagtg
gctgacaactaa
DBGET
integrated database retrieval system
