Cyclopterus lumpus (lumpfish): 117745126
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Entry
117745126 CDS
T09199
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117745126 (prdm1a)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117745126 (prdm1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
Zf-C2H2_ZNF451_C
C2CH-3rd_BIRD-IDD
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
117745126
NCBI-ProteinID:
XP_034409100
Ensembl:
ENSCLMG00005007252
LinkDB
All DBs
Position
16:complement(2270787..2283977)
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AA seq
842 aa
AA seq
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MCGWDQSYTATSHSSAMLTSEGAHAMEQDDHGAKMAATASSGRSGSDGVETTMTATMTAA
LAADADVEMEEADMTRWTEAEFEEKCTYVVKDTPREAGPDGGGATTTTATRAEASLPRNL
AFKHPADSEEVVGVCSSEYIPKGTRFGPLVGEIYTADSVPKDANRKYFWRIYEDQDFHHF
VDGLDETRSNWMRYVNPAHSAAEQNIAACQNGVEIYFYTVKPVPAGAELLVWYCHDFARR
LHYPPSGELMMAKLKQSLLEVKQQQVSSEELRLEACSPSPAAMAPTPPKREHSVLSILRG
TTSSTSSVKREPSRPLPTRPRCADSPERPLYPRALYPALRPHPHVPEDFLGHKPGQLGYP
ATRSPGSHSSATPSPSARSSPDSSPQGSPSGPASFYPAGLGSYPGYSPPFTPLSSSFYPP
GAPYSRYLLPHHYPLPGGVPTIGGIFPRMYSGLLPPHVPLLPSDAAGRRFLMPDHVHPTS
ISAHRDFLLPRPTSAFQAATSLKDKAAPHHPYSGHPHRPAHAPCGGSPPAGTAPPNERMP
TKPTSALLGNSSDPCSDEEAVNLSKVKRGPGSAGYKALPYPLKKQNGKIKYECNVCSKTF
GQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHFLVHTGEKPHECQVCHKRFSSTS
NLKTHLRLHSGEKPYHCKLCPAKFTQFVHLKLHKRLHSRERPHKCAHCHRHYIHLCSLRL
HLKGYCPAVSDPAASEELQRANEEIERFDVSEHAEQLEQLQGGAEVEAVLEKQVLGLLWR
EPDLKASHFHPRHKGSAELLSAGYAASYESPNETSVIKMRRAGSVLSLPANVTVKQESED
RA
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatgggaccaaagttacacggcgacctctcatagctcggccatgttgaccagt
gagggggcgcacgccatggagcaggacgaccacggagccaagatggccgccaccgccagc
agcggcaggtccggctcggacggggtggagacgacgatgacggctacgatgacggcggcg
ctggcggcagacgcggacgtggagatggaggaggcggacatgacccgctggacggaggcg
gagtttgaggagaagtgcacgtacgtggtcaaagacacgccgcgggaggcggggccagac
ggcggcggcgccacgacgaccaccgccaccagggccgaggcgtcgctgccccggaacctg
gccttcaaacacccggctgacagcgaggaggtggtcggcgtgtgcagcagcgagtacatc
cccaaaggaactcgcttcgggcccctggtgggcgagatctacacggccgacagcgtcccc
aaagacgccaatcgcaaatatttctggaggatctacgaggaccaggacttccaccacttc
gtggacggtctggacgagacccggtccaactggatgcgctacgtgaacccggcccactcg
gcggccgagcagaacatcgcggcgtgccagaacggcgtggagatctacttctacacggtg
aagcccgtccccgccggcgccgagctgctcgtgtggtactgccacgacttcgcccggcgc
ctccactacccgccgtccggagagctgatgatggcgaagctcaagcagtctctcctggag
gtcaagcagcagcaggtgagcagcgaggagctcaggctggaggcctgcagcccgtctccc
gcggcgatggcgcccacgccgcccaagagggaacacagcgtcctctccatcctccgcggc
accacctcctccacctcctccgtgaagagggagcccagccggccgctccccacccgcccg
cgctgcgccgacagccccgagcgccccctgtacccccgcgccctctacccggctctcagg
ccccaccctcacgtccccgaagacttcctcggccacaagcccggccagctgggctacccc
gccacccgctcccccggcagccactcctcagccacacccagcccgtcggcgaggagcagc
ccggacagcagcccccaggggagcccctcgggtccggcttctttctacccagccggactg
ggctcttaccccggttactccccgccattcacccccctctcctcgtccttctaccccccg
ggcgccccttattcacgctacctccttccccatcactaccctctccccggcggcgtcccc
accataggaggaatctttccccggatgtacagcggcctcctgccccctcacgtgcccctc
ctgccatccgacgcggccggcaggcgcttcctgatgcccgaccacgtccaccccacctcc
atctccgcccacagagatttcctcctccccaggcccaccagcgccttccaggcggccacc
tccctgaaggacaaagcggcacctcaccacccgtactcggggcacccgcacagacctgcc
cacgcgccctgcggcggctcccctccggcgggcacggcaccccccaacgagcggatgccc
accaagcccacctcggccctgctgggcaacagcagcgacccttgctccgacgaggaggcc
gtcaacctgagcaaggtgaagcgcggcccgggctcggcgggctacaaggcgctgccgtac
ccgctgaagaagcagaacggcaagatcaagtacgagtgcaacgtgtgcagcaagaccttc
ggccagctgtccaacctgaaggttcatctgcgagtccacagcggagagagacccttcaag
tgtcagacctgcaacaaaggcttcacccagctggctcacctgcagaaacacttcctggtc
cacaccggggagaagccccacgaatgccaggtttgtcacaagcgcttcagcagcaccagc
aacctgaagactcacctgcgcctccactcgggggagaagccgtaccactgcaagctctgc
ccggccaagttcacccagttcgtccacctcaagctccacaagcgcctgcactcccgcgag
cgcccccacaagtgcgcccactgccaccgccactacatccacctgtgcagcctgcggctc
cacctgaagggctactgcccggcggtgtccgacccggccgcctcggaggagctgcagcgc
gccaacgaggagatcgagcgcttcgacgtcagcgagcacgccgagcagctggagcagctg
cagggcggcgcggaggtggaggccgtgttggagaagcaggtcctgggtctgctgtggagg
gagccggacctcaaggcctcccacttccacccgcgccacaagggctccgccgagctcctg
tccgcgggctacgccgcgtcgtacgagtccccgaacgagacgtcggtcatcaagatgcgg
cgcgccggctccgtcctgtcgctgcccgccaacgtcaccgtgaagcaggagtcggaggac
cgcgcgtga
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