Cyclopterus lumpus (lumpfish): 117745188
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Entry
117745188 CDS
T09199
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117745188 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117745188 (u2af2a)
Spliceosome [BR:
clum03041
]
Complex A
U2 snRNP components
U2 related factors
117745188 (u2af2a)
Complex B
117745188 (u2af2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Transformer
Motif
Other DBs
NCBI-GeneID:
117745188
NCBI-ProteinID:
XP_034409208
Ensembl:
ENSCLMG00005021113
UniProt:
A0A8C3AQM8
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All DBs
Position
16:complement(11886463..11893927)
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AA seq
478 aa
AA seq
DB search
MSDFDEFERQLSENKQAERDKENRHHRRSSSRSRSRERKRRSRDRDRRSKDRRGDSKDER
RHRRTSPAPFPQDNAGSRSPHREKKKNKVKKYWDVPPPGFEHITPMQYKAMQAAGQIPAT
ALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLT
QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMS
ENPSVYVPGTQPINGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD
SATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLTSINQTPVT
LQVPGMNSSVTQMGGLPTEVLCLMNMVAPEELLDDEEYEEIVEDVKDECSKYGQVKSIEI
PRPVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRRDFW
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaattcgaaagacagctctctgaaaacaaacaagctgaaagggac
aaagaaaaccgtcaccaccgccggtcctcctcccgcagccgtagcagagagaggaaaagg
aggagcagagacagggacagacgcagcaaggaccgtcgcggggacagtaaggacgaacgc
agacacaggcgcacctcaccagcccctttcccccaggacaatgctggaagtcgttctcca
caccgtgagaagaagaagaacaaggtgaagaagtactgggatgtccctccacctgggttt
gaacacatcactcccatgcagtacaaagccatgcaagctgcaggccagatcccagccaca
gcccttctgccgaccatgactccagatggcctggctgttactcccactccagtacctgta
gtgggcagccagatgacccggcaggcccgtcgactctacgttggcaacataccgtttggc
atcacagaggagtcaatgatggacttcttcaatgcccagatgcgtttgggtggccttact
caggcccctggaaaccccgtccttgcagtacagataaaccaggataagaattttgccttt
cttgagttccgttcagtggacgaaacaacacaggcaatggcctttgatggtataatcttt
caaggccagagtctcaagattcgtcgtccacacgattaccagcccttgccgggcatgagc
gagaaccccagtgtctatgtgcctggtacacagccaattaatggtgttgtgtctacagtg
gtacctgactcggctcacaagctcttcattggcggcttgcccaactacctgaacgatgac
caggtgaaggagctcttgacgtcgtttgggcctctgaaggccttcaacttggtgaaggac
agtgctactggcttatctaaaggatatgccttctgtgaatatgtggatgtcaaccttaat
gaccaggctattgctgggctgaatggcatgcagctgggagacaagaagctcctggtgcag
agagccagtgtgggatccaagaacgccactctgacaagtatcaatcagaccccagtgacg
ctgcaggtgccgggtatgaatagctcagtgactcaaatgggtggcctgcccactgaggtg
ctgtgtctgatgaacatggtggccccagaagagctgctggatgatgaagaatatgaggag
attgtggaggatgtcaaggacgagtgcagcaagtacggccaagttaagagcatcgagata
cctcgacctgtggacggcctggaggtgcctgggactggcaagatctttgtggagttcatg
tccgtgtttgactcccagaaggcgatgcagggtctgacaggaagaaagtttgccaacagg
gtggtggtgaccaaatactgcgatccagatgcttatcaccgtcgggacttctggtag
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