Cyclopterus lumpus (lumpfish): 117745221
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Entry
117745221 CDS
T09199
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clum03016
]
117745221 (cdkal1)
Enzymes [BR:
clum01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
117745221 (cdkal1)
Transfer RNA biogenesis [BR:
clum03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
117745221 (cdkal1)
Prokaryotic type
Methylthiotransferases
117745221 (cdkal1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
117745221
NCBI-ProteinID:
XP_034409269
Ensembl:
ENSCLMG00005004820
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All DBs
Position
16:complement(6360118..6561001)
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AA seq
565 aa
AA seq
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MPSACDSLIDDIEDMVSSSDPTPLERQSARKSIMPRSRKKKELLSHEELQTDSLIPGTQT
IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDNPSDADLWVLNSCTVKNPAEDHFRNSIKK
AQEQQKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPDGAMLRLGMTNPPYILEHLEEM
AKILNHPHVYAFLHVPVQSASDSVLMDMKREYCVDDFKKVVDFLKERVPGVTIATDLICG
FPGETEKDFQETVDLVKLYRFPSLFINQFYPRPGTPAAKMEQVPAHMKKQRTKELSQLFH
SYNPYDHKVGERQHVLVTEESFDAQYFVSHNKFYEQVLVPKKAEFKGKMIEVDIYEAGKH
FLKGRPVEESKPFTPSIAKPLQKGEVSGLLKEQIAHGIQQPASSMPSSSALLIGSYSLDR
EALKSLGIGLTLAAAILAFIIEKLY
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgcctgtgactctctgattgacgacattgaggacatggtgtcctctagcgac
cctactcctcttgagagacagtctgctagaaagagcatcatgccaaggtccaggaagaaa
aaagagcttctgagccacgaggagctccaaactgacagtttgatccctggcacccaaaca
atctggatgaaaacgtggggctgcagtcataacaactcggatggagagtacatggccggg
cagctagctgccagcggatacaagatgactgataacccatcagacgcagacctctgggtg
ctcaacagctgcactgtgaagaaccctgcagaagaccacttcagaaactcaatcaaaaaa
gcccaggaacagcagaaaaaggtggtattagcaggttgtgttccccaggctcagccacgg
atggactacctcaaaggactcagcatcattggggtgcaacagattgatcgagtggtggaa
gtagtggacgaggctgttaaaggccactcggttcgtcttttgggtcagaagaaagatgga
ggccggaggctcgggggagctagactggacctgcccaagatcaggaagaatcctctcatt
gaaatcatctccattaacactgggtgtctgaatgcatgtacctactgtaagacgaagcat
gccagaggagacctcgccagctatcccatcgaggagctcgtggagcgagccaggcagtct
ttccaggagggagtgtgtgagatctggttgaccagtgaagacacaggagcttacggtaga
gacatagggacagacctgcccactctgctgtggaggttggtggaggagattcctgatgga
gccatgctgaggctgggtatgaccaacccaccatatatcctggaacacctggaggagatg
gctaagatattgaatcatccacacgtctatgccttccttcatgttcccgtccaatcggcc
tcggacagcgtcctgatggacatgaagagagagtattgcgtcgacgacttcaaaaaagtg
gtggacttcctcaaagagagggtcccaggtgtaaccattgcaacagatttaatctgcggt
tttcctggtgagacggagaaagacttccaagagacggtagacttggtgaaactctatcga
ttccccagtctcttcatcaaccagttctaccccagacccggtacacctgctgctaagatg
gagcaagtaccagcacatatgaagaagcagaggactaaagagctgtcccaactattccac
tcatacaacccctatgaccacaaggtcggggagaggcaacatgtgttggtgacggaggag
tcatttgatgctcagtactttgtgtctcacaacaagttctacgaacaggtgctggtgcct
aagaaggctgaattcaaagggaagatgattgaggtggacatctacgaggcaggaaaacac
ttcctgaaaggccgaccagtagaagagagtaagcccttcactccctccattgccaaacca
cttcagaagggagaggtgtctggcctgttaaaggaacagattgcccatggcatccaacaa
cctgcttcatcgatgccttcttcatctgctttgttgatcggctcttacagtctggaccgg
gaagcactgaagtcgctgggaatcgggctcactctggcagcagccatcttggccttcatc
atagagaaactgtactga
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