Cyclopterus lumpus (lumpfish): 117745226
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Entry
117745226 CDS
T09199
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117745226 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117745226 (cnot3a)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117745226 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117745226 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
117745226
NCBI-ProteinID:
XP_034409285
Ensembl:
ENSCLMG00005020687
UniProt:
A0A8C3G9N4
LinkDB
All DBs
Position
16:11496830..11506340
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AA seq
908 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTTTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQERIEELKRLVERHRFHI
LMLETILRMLDNDSIPVDAIQKIKDDVEYYIDSSQDPDFEENEFIYDDLDLEDIPAALVA
TSPSGQGNLEDEMYLHSNSTPTSTTSSSPIPPYPATCSAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSSTTSGSSSSSSLVSMASVVGGIPIVPTSCSLIGSFSSAVQQQQHQ
PAQQQQQPQPTNQLQQQQSPQTKPSAPSNNTPSPPSNPLLPASTAPSLPMASTASSSATN
SQSQLTSMPNPTSSLGLGLGLGLSKIGLMGTSSANQMSGLGLGLHSSPLNTIVGLISGST
PAAYAQAAASGGLGLSSTTQSSISVESSTSIPTSGSSGVTTNGAVVALGLLGSSPAHSSL
SGSILGLVPGQNMDLSASQLPPSTTPGVVGMMGGNGGNVSMVGGVGVNAAPARPPSGLKQ
NGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQLMDNGPSLITSITLPPSSPSP
SFSDSTPGGGSLLNGPHSYTQASEALKAPEPLSSLKAMAERAALGSGLDGEIPNLHLADR
GRNDIFSGSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWTHM
PHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQY
LSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYR
YLEDRDLQ
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggcgagatcgatagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagacatctggcaaaagcttcacaatgcagccaatgcaaaccag
aaagaaaaatatgaggctgacctcaagaaagagataaaaaaactacagcggttgagagat
cagataaaaacatgggtggcctcaaacgagatcaaagacaagaggcagctagtcgagaac
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgggaaacaaaaaca
aaagcctactcgaaagaaggcttggggctcgctcagaaagtggatccagctcagagggaa
aaagaggaaacgggacagtggctaacaactacaatagacactctaaatatgcaggtggat
cagtttgaaagtgaggttgaatctctttcggttcagacaagaaagaagaagggcgataaa
gataagcaagaacgtattgaggagctcaagcggttggttgagcggcatcgattccacatt
ctcatgttggagaccattttacgaatgctggataatgactcaataccagtggatgcaatc
cagaagatcaaggatgatgttgaatactacattgattcctcccaagatccggactttgaa
gagaacgagttcatatatgacgacttagacctggaagatatccctgcagcattagttgca
acttctccatcaggtcaaggcaatttggaggacgagatgtatctacactccaacagcact
cccacttccacaacctcctcttcgcctattcctccatacccggccacttgcagtgctgag
aactcggaggacgataagaaaagaggacgatcgacagacagtgaagttagtcagtcacct
gtgaagaacggcaccccgtccttgctatcttccttctcctcctcctccaccacctctgga
tcctcttcatcctcctcccttgtgtccatggcaagtgttgtcggaggcattcccattgtt
cccacaagctgcagccttatagggagcttcagcagtgcggtgcagcaacagcagcatcaa
cctgcacaacagcagcaacaacctcagccaactaaccaactgcagcagcagcagtcgcct
cagacaaagccctctgccccctcaaacaacacccccagcccacccagcaaccctcttctc
ccagcctcaactgcaccctctctccccatggccagcacagccagttcctcagctaccaac
tctcagtctcagctcacatctatgcccaaccccacatccagtttgggactcgggctaggg
ctgggattgagcaaaattggcctgatggggaccagcagtgccaaccaaatgtctggtttg
ggcctgggtctccactcgtctcctctaaacacaatagtagggctcatttcaggctccaca
cctgccgcttacgcccaggcagcagcatcgggaggcttgggtttgagcagcaccacccag
tccagcatttcagtagagagcagcacttccatacccacctctggctccagtggagtcacc
accaacggggcggtggtagcactcggtttgctaggttccagcccggcccacagctctttg
agtgggagtattctgggactggttcctgggcaaaatatggacctcagtgcctcccagttg
cccccaagcactacacccggagtagttggcatgatgggaggcaatggagggaatgtcagc
atggttggaggagtaggagtgaatgctgctcctgctagaccacccagtggactgaagcaa
aatggtagtacaagttacagtgctgtagtggcagagagctcgacagaatcagctctaagc
acaccgagccagtcacaaagcagccaaccctcatctctcagttcttcaaccagtcaactg
atggacaatggtcccagtttaatcacctccatcaccctgcctcccagctctccgtccccc
tcgttctcagacagcacacccggaggagggagtcttctcaacgggccccactcctacaca
caggcctctgaggctctcaaggcccctgaacctctcagttctctgaaggcgatggctgag
cgagcagcgctgggatcgggccttgatggagagattcccaacctgcacctagcagaccga
ggtcggaacgatatcttctcgggttcatctgcagcgcccggcacacctgccgcccctcag
ccgtccgtgtcggaagtcagcatccccccctcgcttggggtctgtccacttggccccacc
cctctccccaaagaccagctctaccagcaggcaatgcaggaatctgcatggacacacatg
ccacacccctctgactctgagaggatcaggcaatacctgatgaggaatccgtgtcccacg
ttgcccttccaccatcagataccaccgcaccactcagactctatagagttctaccagagg
ctgtccacagaaactctatttttcatcttctactacctggagggcaccaaggctcagtat
ttgtctgcaaaggctctgaagaaacagtcatggaggtttcataccaagtacatgatgtgg
ttccagaggcacgaggagccaaagactataactgatgaatttgaacagggcacttacatt
tactttgactatgagaaatggggccagaggaagaaggaggggttcacctttgagtacagg
tacctcgaagacagagacctgcagtga
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