Cyclopterus lumpus (lumpfish): 117745545
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Entry
117745545 CDS
T09199
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117745545 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117745545 (rad54b)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
117745545 (rad54b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
117745545
NCBI-ProteinID:
XP_034409838
Ensembl:
ENSCLMG00005005551
LinkDB
All DBs
Position
16:complement(10097520..10109568)
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AA seq
940 aa
AA seq
DB search
MRRSGAPSQLLGNALKKPRFMPPGASTSCLVAKSKPLTPTLGLSNALEKVQRSLPAPACD
VQPKAAQSAPVLSRALARVLSAAESKENEAESEHASKGSEEHTKDNRPAGVDGYPQWTSG
TSQTAQPPGSLVCVTGAAGSESGCSQDGVRYFSVMWCKASKKKHKRWEGDAVMVTRGRST
TLKDMEGKDIGKGSGYKVSVLASLSEGETLMIGGKEVEVMGVISAEDFARGRCFQEVQVQ
NEGLHTESAPPPSRCLVSKRFCSPTMLGRADPPGSKLEEEQVYRPRHDPLAPGALVMPRP
SANHQWLNNKSGLPVVDVVVDPFLTNQLRPHQRDGLLFLYECVMGLRAVGHYGAILADEM
GLGKTLQSVALSWTLLKQGPYGGKPVTKRVLVVTPGSLVHNWAAEFNKWLGRERISVFSV
DQDHRIEQFVLSPLHSVLVISYEMLLRCLEQVQKVEFGLVICDEGHRLKNSSIKTSSALS
SLHCARRIILTGTPVQNDLQEFYAIIEFVNPGILGSSTAYRKVYEEPILRSRQPSCSEEE
SVLGEERATELSRLTGMFILRRTQEIINRYLPPRLDWTLFCEPSPLQRELYTHLLCHRVF
RGCLQGSTQTHTHLACITALKKLCNHPGLLYSSAKERTDSGSVENTLYEGLVEFFPESYS
SSGCNTADSGKLLVLSNLLASIRQLSPSDRVVVVSNYTQTLDLLQDLCVNVGYTFCRLDG
HTPTNQRQRLVDGFNSPYSQNFLFLLSSKAGGVGLNLVGASHLVLYDIDWNPANDIQAMA
RVWRDGQKKTVHIYRLLTAGTIEERMFQRQVSKQGLSGTVVDLGKRAEHTSFSTSELRDL
FSLTDTLSLTHDLLNCSCTMDGSVQPSAALEDEEQVSDRPCQLGRQGDRGGTQQKHLSMS
ELMQWRHFSGDTHTFSDPYLDHARNHITFAFQTTISHTAV
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgctcaggagctcccagccagctcttgggtaatgctttgaaaaagccccggttt
atgccccctggagcatctacttcctgtctcgtggctaaatctaagccccttacccctaca
cttggtttaagcaatgcactagaaaaggtccagagaagtctaccagcaccagcatgtgat
gtccagcccaaagctgcccagtctgctccagtcttgtcgagggctctggctcgtgttctc
agtgcagcggaaagtaaggagaatgaggctgagtcagaacatgccagcaaaggttcagaa
gagcacacaaaagacaacagacctgcaggagtggatggataccctcagtggacctccggg
acttctcaaaccgctcagcctccagggagtttagtctgtgtcactggagctgcaggctca
gagtcgggctgcagtcaggacggagtgcgttacttcagtgtgatgtggtgtaaagccagt
aagaagaaacacaaacgctgggagggcgatgcggtcatggttacaagaggacgctcaacc
acactgaaagatatggagggcaaggacattggaaagggaagtggctacaaggtgtcagtg
ctggcctccctgtccgagggagagaccttgatgatcggagggaaggaggtggaggtgatg
ggggtcatatctgctgaggacttcgccaggggccgttgcttccaagaggtccaggtacag
aacgaggggctgcacactgagtcagctccacctccctctcgttgcttggtgtccaaacgt
ttctgctccccaacaatgttggggagagcagatcctcctggatccaaactggaggaggaa
caggtctacagacctcgccatgacccactggctccaggtgcactggtgatgcctcgtcct
tctgccaatcaccagtggcttaacaacaagtctgggcttcctgtggttgatgttgttgtt
gacccgttcttgactaatcagctgcgacctcaccagcgagacggccttctctttctctac
gagtgtgtcatgggcttgagagctgtgggtcactatggggctatcctggctgacgagatg
ggtctggggaagaccctccagagcgtggcactgtcctggacattgcttaaacaaggacct
tacggtgggaaaccagtcactaagcgtgtacttgtggttactcctggcagcctcgtgcac
aactgggctgcagagtttaacaagtggctgggccgtgagaggatcagcgtcttcagtgtg
gatcaggaccataggatagagcagtttgtgctctcccctctgcacagcgttcttgtgatc
agctatgaaatgctgctgcgctgcctggagcaggttcagaaagtggagtttggccttgtg
atttgtgatgagggccacagattaaagaacagcagcatcaaaacgtcctctgccctcagc
agcctgcactgcgctcgcagaatcatactaacaggcaccccagtccagaatgacctgcag
gagttctatgctattatagagtttgttaacccagggattctcgggtcgtccactgcatac
agaaaagtatatgaagagccaattctacgctccagacagccctcctgctcagaggaggag
agcgttttgggagaagagcgagcaacagagctctctcgcctgactggcatgttcatcctg
agacgaacacaggagatcatcaaccgctacctgcctcctcgtctcgattggacgttgttc
tgcgaaccgtcccctctgcagcgagagctgtacacgcatcttctctgccacagagtcttc
agaggctgccttcagggctccacgcaaactcacacacacctggcctgcatcactgcactg
aagaagctctgtaaccaccctggtctgctctacagctctgccaaggaaagaacagacagt
ggttcagtggagaacactttatacgagggcttggttgagttcttcccagaatcctactct
tcaagtggatgtaacacggctgactctggaaaacttctggttctgtcgaaccttctggct
tcaatcagacaactcagcccttcagacagggtggtcgtagtgtccaactatacacagacg
cttgacctgctccaggacttgtgtgtaaatgtgggctacaccttctgccgacttgatgga
cacacccccaccaaccagagacaacggctggttgatggttttaacagtccctactctcag
aacttcctgtttctgctgagctccaaagcaggtggcgtggggcttaatctggtgggtgct
tcccacctggtgctgtatgatattgactggaaccctgctaatgacattcaggccatggct
cgagtgtggagagatggacagaagaagactgtgcacatctatcgtctcctcactgcaggc
actattgaggagcgaatgttccagagacaggtgtccaaacaggggctctctgggacggtg
gtcgacctgggcaaaagggcggagcacaccagcttctccaccagtgaactgcgagatctt
tttagcctgactgacacgctctctctaacacacgacctgctgaactgcagctgtaccatg
gacggctcagtccagccctcagctgccttggaggacgaggagcaggtttctgatcggccg
tgccagctcggacgtcaaggtgaccgcggagggacgcagcagaaacatctcagcatgtcc
gagctgatgcaatggagacatttctctggtgacacacacaccttctcagacccttacctt
gatcacgcacgaaaccacatcaccttcgccttccagaccaccatctctcacacagcggtg
taa
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