Cyclopterus lumpus (lumpfish): 117745559
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Entry
117745559 CDS
T09199
Name
(RefSeq) endoribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117745559
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
117745559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH
zf-CCCH_2
UBA_N4BP1_C
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
117745559
NCBI-ProteinID:
XP_034409856
Ensembl:
ENSCLMG00005008781
LinkDB
All DBs
Position
16:complement(14273210..14280132)
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AA seq
647 aa
AA seq
DB search
MNITQRPCNKYSMLLIRGPYAPGMDQALPSQSSVLDQLEPDSEELQLRVDFFRKLGYPSS
EAKAALRKLGLSTDTNSVLEELVLSRTGVAPCMSSSDGDEISTGQKDPLLPPSWALGTCR
TNLQHGDRKNTDTELRPIVIDGSNVAMSHGNKEVFSCRGIQLAVNFFLDRGHNTITVFVP
TWRKEQPRPDGPITDQHILTELEKRKIVVFTPSRRVGGKRVVCYDDRFIVKVAYESDGVI
VSNDTYRDLQGERPEWKKCIEERLLMFSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLPTE
QKRQLCPYDKKCTYGIKCKFYHPERSNQSYLSLADELREKAQISTVKEQRNARVSPRQLQ
SDPGPALDAFPHPKDSNTEHTRDQQSYSHPSQVCKNTLYWEDPRKSQNHMPCPVTGGQGQ
KEWPGLHSMPNHYYANVSHDYLDSGLGSYESQYSDYSHCLNHSHSLRPQQQSALAGPRHA
QNNTSQSCRCCSHIVPAQQQHHGDQGTKGQPKYDTYPPHMFPASVPHQNSLRSHLPYSGA
PHHQQHYWSDPFQGLPQARTSCVLPSSVHSSHPHNCSYKGQQHHFSGQQQSSSAAYDPQT
LELRKKLQAIFNPQQVDRVMEMFPHVMNAEKLAAEILNLKAQRGIFG
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcacccagaggccgtgtaacaagtattctatgctgctgataagaggcccatat
gctccaggaatggatcaggcacttccaagccagagctcagtgttggaccagcttgaaccg
gacagcgaggagctccagctcagagtggacttcttcaggaaactgggttacccctcatca
gaggcgaaagctgctctgaggaagctgggcctgagcacagacaccaactctgtgctggaa
gagctggttctgagcaggaccggagttgcaccctgcatgtccagttctgatggtgatgag
attagcacgggccaaaaggacccactgctgcctcccagttgggcccttggaacctgcaga
accaatctacaacatggggaccggaagaacacagacacagaattgaggcccattgttatt
gacggcagcaatgttgcaatgagccacggcaacaaggaagtgttctcatgtcgcggcatc
caacttgcagtaaacttctttctggacagaggtcacaatactattacagtgtttgttccc
acttggcgcaaagagcagcccagacctgacggccccataacagatcaacacatcctgact
gagcttgaaaaacggaaaatagtggtcttcactccatcgcgccgagttggtggcaagcga
gtggtttgctatgatgatcgcttcattgtcaaggtggcgtatgagtcagatggagtaatt
gtatccaatgacacataccgcgacctccaaggagaaagacctgagtggaagaaatgcatc
gaggagaggctcctcatgttctcctttgtgaatgacaaattcatgcccccagatgaccct
ctgggtcgccatggacccagtcttgacaacttccttcggaaaaagccgctgcctacagag
caaaagagacagctgtgtccttatgacaaaaagtgtacttacggtatcaaatgtaagttc
taccacccagagcggtcaaaccagtcctacctgtcattggctgatgaattgagagaaaaa
gcccagatttctactgtaaaagaacaaaggaatgccagagtatcacccaggcaacttcag
tctgatcctgggccggctcttgatgcatttccccatcctaaagactcaaacacagagcac
acaagagaccagcaaagttactcacatcccagtcaggtttgcaaaaatacactgtactgg
gaggatcctagaaaaagtcaaaatcatatgccctgtcctgtaacaggaggccagggtcag
aaagagtggcccgggctgcactccatgccaaatcattactatgccaacgtctctcacgat
tacctggattctggccttggctcttatgagagtcagtactctgactattcgcattgcctc
aaccactcccacagcctcaggcctcagcagcaaagtgccttggctgggcccagacatgct
caaaacaacaccagccagtcttgcaggtgctgttcccacatagtgccagctcagcagcaa
caccatggagaccagggcaccaagggtcaacccaaatacgacacttaccctcctcacatg
ttcccggccagtgtgccacaccaaaacagcctccggagccatctcccttacagtggagcc
ccacatcatcagcaacattactggtcggatccctttcaggggctgccccaagccaggaca
tcatgtgttctcccctcttcggtccattcatcacaccctcacaactgctcttacaaaggc
caacagcaccacttctcgggccaacaacagtcgtcctctgctgcgtacgacccacaaacg
ttggaactccgcaagaagctgcaagccatcttcaacccgcagcaggtggatagagtcatg
gaaatgtttccacatgtgatgaatgcggagaaactggctgcagagatcctcaacctgaag
gctcagagaggtatattcggataa
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