Cyclopterus lumpus (lumpfish): 117745774
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Entry
117745774 CDS
T09199
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
clum00535
]
117745774 (col14a1a)
Proteoglycans [BR:
clum00535
]
Extracellular matrix (ECM) proteoglycans
Others
117745774 (col14a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Fn3_PBP1
Pur_ac_phosph_N
Fn3_VIN3
VWA_3
DUF4959
Motif
Other DBs
NCBI-GeneID:
117745774
NCBI-ProteinID:
XP_034410195
LinkDB
All DBs
Position
16
Genome browser
AA seq
1881 aa
AA seq
DB search
MSSTVFPLVWAGGSTAALRSRLLAVRMLSAGQIRWCLWTPLVLLVLVLHFPSKAQGQVPA
PRRLRFKVLSPSKLLVSWREPKGDFDSYLFLYNSTGGQQREIIISKSDTKVLITDYSPSK
DYTASVISVSGSEQSSPLQGRHKAERGERDGEDKTKPERLTESVVPTEDANEISGADQFV
CHTEAIADIVILVDGSWSIGRLNFRLVRMFLENLVDAFDVGIDKTRIGLAQYSGDPRIEW
HLNGFSTKDAVIDAVKNLPYKGGNTLTGLALTYILENCFKQESGSRVGIPKIGILITDGK
SQDDVIPPAESLRNAGIELFAIGVKNADENELLSIASEPDNTHVYNVADFNVMSSIVQGL
TKIVCEQVEQQDKDIKQQHPPEETGAPLELVTSEVTARSFRVSWSHAPGHVEKYRVLYYP
DSEGEPQEAVVDGSETSAVLQHLRSLTEYQVAVFAVYANEASEALRGSETTLALPTVTAL
QLLDVTPSTMKARWDSVDGVSGYMLLYAPLTDDGNFDETEVKVSDVVTELELDGLTPRTE
YTVTVYAMYGEEASDPITNQKSTLPLSPPTNLQFSDITHNSAHINWDPVPRKVKGYRIMW
VKTDGLVTEEVEVGPDNSYDLSELTSLMEYSVAIFALYNEGQSEALTDGFTTTPVPGPLH
LRSNNVGTDGFQVSWDHSANDIILYRLSWAPFIGGDTKEVVLSGIDNRYTLNGLSPSTEY
EVMLTAVFRDESESDTISVIETTWAQTTTIATTTPVARQAVRNLLLSEETTQSMEASWEL
EDPHVESYRVSYAGLWGTHQEESVLVPGVEMSAALHPLLSDTQYKVTVTPVYTDGQDGIS
VSVLGATLPLLSPGNLRVSEEWYNRFRVTWDPPQSPAVGYRIAYQPLYDPGPVLETTVGE
DVNSKLLLSLLSGTEYSVQVTASYPAGQSEPLLVNAKTLFLGVSGLSTYQVRANSLCVQW
QPLLRATLYRVSIQSTLNGQRQEVSLGGGASRQCFYDLTPSSQYQISIHTQMQEMEGPSV
SITDMTLPAPTQAPTELPITEPPPTIPPAKEVCKEAKADLAFLVDGSWSIGDDNFMKITR
FLYSTMGSLDLIGPDGTQVAIAQFSDDARTEFQLSSHGNKEALLEAIQKIRYKGGNTKTG
RAIKHVKESIFTSEAGARRGVPKVLVVLTDGRSQDDVNKVSKEMQVDGYIIFAIGFADAD
YGELVNIASKPSDRHVFFVDDLDAVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMM
EKFGLVEKEYSTIPGVSLEPGSFNSFPCYRLHRDALVSQPTKYLHPEGLPSDYTISMMLR
LLPETPHEPFALWEILNKDNEPLVGLILDNNGKTLTFFNYDYKGDFQTVTFEGTEIKKIF
HGSFHKLHVTISKTSVKVVLDCSVVGEKSVSAAGNITTDGVEILGRMLQSRGRRDNSAPF
QLQMFDIICSTSWASRDKCCELPALRVEEQCLSMPHACTCSQESKGPPGPSGPPGGPGIR
GARGDRGEPGVTGPHGPAGELGPSGPSGPPGPQGPSGLSIQGPPGAAGEKGQRGEIGPAG
QMGVPGSSGSSGRDGPPGVRGLPGNNGPQGRQGPSGPVGGPGGPGALGPGGSTGSQGDQG
LPGPAGTKGDKGERGDVQSQAAVRAIARQVCEQLIQSHLSRYNSILNQIPVQSAVSVRTV
PGPPGEPGRRGIPGSQGDQGPTGRPGFPGSSGQSGRPGERGPLGEKGERGSPGVGSQGPR
GPSGPPGLPGEGRTGSQGPPGRPGNPGTAGRSGNPGGTGPAGPPGYCDQNSCLGYNVGVQ
PLPQGGYQPFNQPYNPAAVAYNNDQGGEEEEEEEEEEQDPYYRGYPPQYYPHGYHSSPTH
SEDTEVRSPGIARRFPRSVVV
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccactgttttccccttagtgtgggcgggaggctcaaccgctgctctgcggtct
agactgctggctgtgaggatgttgtcagcggggcagattaggtggtgcttgtggacccca
ctggtgttgctggtcctggttttgcatttcccctctaaggcacagggtcaagttccagct
ccaaggaggctgcgtttcaaagtgctgagcccaagcaaactcctggtttcatggagggag
cccaaaggagactttgacagctatctatttctctacaacagtacaggtggtcagcagagg
gagattataatatctaaatctgacacaaaggtgttgataacagattacagcccctctaag
gactacactgccagtgtcatcagcgtcagtggcagtgagcagagctcgccacttcagggc
agacataaagctgaaagaggtgagagggacggagaagacaagactaagccagagaggctg
actgagtcagttgtacctactgaggatgccaacgagatctctggagctgatcagtttgtc
tgccacactgaggccattgcagacatcgtgatcctggtggacggctcctggagtatcggt
cggctcaacttcaggctggttcgcatgttcttggaaaatctggtcgatgcctttgatgtt
ggcatcgataaaacaaggataggtctggctcagtacagtggtgatcccaggatagagtgg
catctaaatggtttctccaccaaagatgctgtcattgacgctgttaagaacctgccatac
aaaggaggaaatactctcacaggcctggcattgacctatatcttggagaactgcttcaag
caggagtctggctcccgggtgggtatacctaagattgggatcctcatcacagacgggaag
tcccaggacgatgtcatacctcctgcagagagtctgcgtaatgctgggattgagctgttt
gctattggtgttaagaatgctgatgagaatgagctgctctccattgcctcagagccggac
aacacgcatgtctacaatgtggccgacttcaacgtcatgagctccattgtacagggtttg
accaagattgtgtgtgaacaagtggagcagcaagacaaggatatcaaacagcaacatcct
ccagaggagacaggagcgccacttgagctggtgacatcagaagtcacggcccgcagcttt
cgggtttcatggagccacgcccccggacatgtagagaaatacagagtgctttattatcct
gatagcgaaggagaaccacaggaggcggtagtggacggtagtgagacttcagcggtgtta
cagcatctccgctctctcactgagtaccaggtggctgtgtttgctgtgtatgcaaacgag
gcaagtgaagctctcagaggatcagaaacaaccttggcccttcccacagtgacggctctc
cagctgttagatgtgactcccagcaccatgaaagcgcgatgggacagtgtggatggagtt
tctggctacatgctgctgtatgcaccgcttacagacgatggaaactttgacgagacggag
gtcaaggtgtcagatgtagtgacagagctggagctggatgggttgacccctcgcactgaa
tacaccgtcactgtttatgccatgtatggggaagaggctagtgaccctattacaaaccag
aaatctacattaccactgagtccccccaccaacctccagttctctgacatcactcacaac
tccgcccacatcaactgggaccccgtgcccagaaaggttaaaggttaccgcatcatgtgg
gtcaagacagacggactagtcacggaggaggtggaggtgggtccagataactcttatgac
ctcagtgagttgacgtctctgatggagtactcagtggccatctttgccctgtacaatgag
ggccaatcagaggcccttacagatggattcactaccactccagttcctggtcctttgcat
ctacgctccaataatgttggcacagacggcttccaggtcagctgggatcactcagccaat
gacatcatcctctacagactctcctgggcaccgttcataggtggcgacacgaaagaggtg
gtcttgagtgggattgataacagatacacgctgaatggtctgagtccgtcgactgagtat
gaagttatgctgacggctgtattcagagatgaatccgagagtgataccatctctgttata
gagaccacatgggcccagacgacgacgattgctaccacaaccccagtggcacgtcaggct
gtgagaaaccttctgctgagtgaggagaccacccagagcatggaggcatcatgggagctg
gaagacccccatgtggaaagctacagggtctcctacgccggcctctggggcacccaccaa
gaggagtctgtgttagttcctggtgttgagatgagtgcagcgcttcatcctttactatcg
gacacccagtacaaagtgacagtcacaccagtgtacaccgatggacaagacggcatcagt
gtctctgtgctgggtgccacattgcccctcttgtctcctggaaacctacgcgtgtcagag
gagtggtacaatcgcttcagggtcacctgggatccacctcagtcgccggcagtgggttac
aggattgcataccagcccctctatgatccaggaccagttttggagacaacagtgggtgaa
gatgtgaactccaagctgcttctgagtctactgagtgggacagagtacagtgttcaagtg
acggcttcctaccccgcaggacaaagtgaaccactgctagtgaatgccaaaacattgttc
ctcggtgtctctggcttgtcgacctaccaggtacgtgccaacagcctttgtgtccaatgg
cagccccttctacgtgccacgttgtacagagtctccatacagtctacactcaatggtcag
agacaggaagtgagcctgggaggtggtgcttcccgacagtgcttctatgacctcactccc
agcagccaataccagatcagtattcatacccagatgcaggaaatggaaggaccttctgtt
tccatcactgacatgacgctgccagcacccactcaagctccgactgaactccccatcaca
gagccccctcccaccatcccacctgcgaaagaagtgtgtaaggaggccaaggcggacctg
gcattcctggtcgatggttcttggtccattggagacgacaacttcatgaagatcacacgt
ttcctctacagcaccatggggtcactggatctgattggaccagacggtacccaggtggcc
atcgctcagtttagcgacgatgctcggacagaattccagctgagttcccatggcaacaag
gaagcgttgttggaagctatccagaagatcagatacaagggaggaaacacaaagacaggc
cgggccatcaaacatgtgaaggagtctattttcacctcagaagctggagctcgaaggggc
gttcctaaagtcctggttgttctcactgatggacgttcccaagatgatgtcaacaaagtg
tccaaggagatgcaggtggatggctatatcatctttgccattggctttgcggatgctgat
tatggggagctggtgaatattgccagcaagcccagtgatagacacgtcttctttgtggac
gatttggatgctgtgaagaaaatagaagagcagctcattacttttgtctgtgaggctgcc
accgccacttgtccatctgttttgatgagtggtaacacaatggcaggtttccgtatgatg
gagaagtttggcctcgtagagaaggagtacagcaccatacctggagtttctctggagcca
ggttcattcaacagtttcccctgttaccgattacaccgtgacgccctggtgtcacagccc
accaagtaccttcatcctgaaggtttaccctctgactacaccatctctatgatgctccgc
ctacttccggagaccccgcacgagccctttgcattgtgggaaatcctcaacaaggacaac
gagccattggtcggactaatcctggacaacaatggaaagaccttgacgttcttcaactat
gactacaaaggagacttccagaccgtcacttttgaaggaaccgaaataaaaaaaatcttc
catggcagcttccacaagctccatgtgaccatcagcaagacgtctgtgaaggtggtgtta
gattgttccgtggttggggagaaatccgtgagtgctgctggtaacattaccacagatgga
gtggagatcctcggaaggatgcttcagtccagaggcagacgggacaactctgctccattc
cagctccagatgtttgacatcatctgtagcacatcctgggccagcagagataagtgttgc
gagctgccggcattgagagttgaggagcagtgcctttccatgcctcatgcctgtacctgc
tcccaggagagcaaaggacctccaggaccttctggaccccctggcggtccaggcataagg
ggagccagaggagaccgaggagaaccaggagtgacgggacctcatgggccagcaggagag
cttggtccttctggaccctcaggacctcctggtcctcagggacccagtggtctctctatt
cagggacccccgggtgctgctggggaaaagggacagagaggagagatcggtccagccgga
caaatgggtgttcctggaagctcgggctcctctggtagagacggccccccaggagtgagg
ggtctgccgggtaataatggaccacagggacgacaagggccttctggacctgttggaggc
ccaggaggaccaggagctctaggacctggtgggtcaacagggtcccaaggagatcaagga
cttcctggtcctgctggtaccaaaggtgataagggagaaagaggtgatgtgcaatcccaa
gctgccgtgcgtgccatcgcacggcaagtgtgtgagcagctcatccagagccacttgtct
cgctataactccatactgaaccagatccccgtccagtcagcggtgtcagtccgaacagta
cccggaccacccggagagccaggtaggagaggcatcccaggatctcagggagaccaaggg
ccaactggcaggccgggcttcccaggcagcagcgggcagagcggacgaccgggagagaga
ggtcctctgggagagaagggagagagaggaagtccaggagttggaagtcagggacctcga
ggaccatccggacctccaggcctgccaggtgaaggacggaccggcagccagggcccccct
ggtcggcctggtaatccgggaacagcggggaggtcagggaatccaggtggcacaggacca
gccggcccgccaggctactgtgaccagaactcctgtctggggtacaacgtcggagtccaa
cccctgcctcagggcggctaccagcccttcaatcagccgtacaaccctgctgcagtggct
tacaacaacgaccaaggaggcgaggaggaggaggaggaggaagaagaagaacaggacccc
tattaccgtggttacccccctcagtactacccccatggttaccactcgagccccacccac
tctgaggacacggaggtgaggtcgccgggcattgccaggaggtttccccgtagcgtagtg
gtgtga
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