Cyclopterus lumpus (lumpfish): 117746120
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Entry
117746120 CDS
T09199
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117746120 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clum01009
]
117746120 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117746120 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
clum03029
]
117746120 (rb1cc1)
Protein phosphatases and associated proteins [BR:
clum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117746120 (rb1cc1)
Membrane trafficking [BR:
clum04131
]
Autophagy
Autophagosome formation proteins
ULK complex
117746120 (rb1cc1)
Mitochondrial biogenesis [BR:
clum03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
117746120 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
117746120
NCBI-ProteinID:
XP_034410882
Ensembl:
ENSCLMG00005022814
LinkDB
All DBs
Position
17:complement(19922236..19934817)
Genome browser
AA seq
1628 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKVAVQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHMQHQGWAAIMANLDDCTLSYQKLLVKFDTSYTNYQH
DLEEIKIKLSKLGTSVSVMARIPLLECLTRHSYRESMEKSSPTPGKDSDETEGEKSTDSV
LRGTDAQRPSKSSASSPASGRATCEPPGNQETKKMTDSGGLRAALLDDDDDDDDDDDDDE
DDDDDDDDSPEFTNPSCFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLTD
CRDTISKLDNQNMKAIKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDT
SVLPDLCLSHTNQLMIMLNNHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDG
EKLQALLRLLTELIERVRVVDALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKR
LYEAEKFKRESFGKLFRKSFLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISLDDLQYL
KSCCPLEVQPFLMVPTMCDFEPLNRHVETLHRLVQAAQSVDEMSQTITELLSEQRISFSQ
RSSMLTPQSGSVPGTTTPRSSKTPSSLSLQGPSCQPLLVPVPAPLEDLSPDSIDAQTFDF
ETIGHPNMDPVLQQGSLDLDSLAESPESDFMSAVNEFVIEENLTSPNPISDPVSPEMMVE
SLYSSVINAIDNKRMQDTTILERENSRITVLKQVIEKYRSAAEESHSNFRSVKDDLHHLR
GMVLKEQHDFGFVLRNLTTEVSNIVDSICQTQKLELKEQHQSELLSLRQELEKQVQTLTE
ENQVNQNIVRDVQRAMLELEGLMERKEKELTQLESEKERCAQTEGNQTERIKSLEQMMSD
QTEEIKTLSTSRDSLTSQLENLHFEIERSQQKIRQELEDVERSHLKEMEDKMKREHTANL
ETLAKVNQEALEHLAAENSATSSEAAERHAAALQEKENHTKDLEARVTELAELRCKVEVE
LAFKESETEELRLLFEEAKAQQAETVKAQVEAATEVLSEELADVKKQLHVKNEEYEVDLA
ELRSLMRLEKDHCISELVDAHEDEAILLRNELISLQRQVREADENHAEQQQKLEQAGALN
EEKEERFRSFQELEQELRTAIDDLQADNDLLSKKIEQDRQATETDLGKELTSKVASPDAL
NELEQQKKDMEKRLLDKIRQLEDELHGRRSSKSDEGLPLHAEGRADAGAPLSLDSALQER
LQQERACLQSQMDLLEKKKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINELTEKW
RTVTQQQEKDKALIETLSEDRASVMQEKKHLEEELNRLRGAALVSSAFFSPRPSSGRETS
EAGAPPVAGAFSCEPEADRLASVAAIPDDEQVDSAAEASMVTVHDIVLMSEEKQRILLLE
RTLHMKEEENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFTV
GPTLYFLHSESLTALDLKPATGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVK
AVPWNRKV
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggcagcacattgacatttgacactgatctt
gctgtccaaactgtactggagcttaaacatgccatccaagccaaatataaggttgcagtt
caacatcaagtccttgttgtcaatggaggggaatgtatggctgcagagaggcgggtctgc
agctacagtgctggcactgaaaccaaccccatattcctgttcaacaaagagatgatcttg
tgtgaccgggatccaacgatccccaaaaccaccttctcgattgagagtgagattcaggtt
aaagtagaggagtctctactgatgccagcggtctttcacactgttgcctcgcgaacacaa
cttgctctggaaatgtttgaagttgccaagaaactttgctctttctgtgaacggttggtt
cacgatgaacacatgcaacaccaaggctgggctgccatcatggctaatctggacgactgc
actttgtcttatcaaaagttgctcgtcaaatttgacacttcgtacacaaactatcaacat
gacctggaggaaattaagatcaaactctcaaagttagggacatcggtttctgtaatggcg
aggatacctctgctggaatgtttgacaagacacagttacagagagagcatggagaagtca
agtccgaccccggggaaggattcggacgagacggaaggagaaaaatccacggactctgtg
ctccgcggcaccgatgcacaacggccctccaagtcgtcagcctcctccccggcttctggg
agggccacgtgtgagccacctggcaaccaggaaacaaaaaaaatgactgacagcggtggg
ctgagagctgcacttctagacgatgacgacgacgatgacgatgacgacgacgatgacgag
gatgatgatgatgacgacgacgattctccagagttcaccaacccgtcctgcttcaatgtc
acactattggactggatcaatgtgcaagaccgacccaatgatgtggaatcggttgtgagg
aaatgctttgactccatcaataggctcgaccctcgtattattcaacccttcctgacagat
tgtcgcgacacaatttccaagctagataatcaaaacatgaaagccatcaaggggctcgag
gaccggttgtacgctctagaccaaatgattgcaagctgtaagaagttggtgaatgaacag
aaagaacttgctcagggatttctggccaatcagaagcgggctgaaaacctgaaggatacg
tctgtgctgcctgatttgtgtctgagtcacaccaaccagctgatgatcatgctgaacaac
cacaggaagctgcttgacattaaaaagaagtgcaccactgccaaacaagaacttgcaaac
aaccttcaagtccgacttaaatggtgctgctacgtgatgcttcatgcggaccaggatggg
gagaagcttcaggctctactcagacttctgacggagctaatagaaagagtgagggtggta
gatgccctcagcactgtgccccagatgtactgcttggcggtggttgaagtcgtccggcgg
aaaatgttcatgcgccactacagagagtgggcttacgcgctcgtgaaggacgggaaacga
ctgtacgaggcggagaagttcaaaagagaatcctttggtaaactcttcaggaagtctttc
ctcaggaatcgtttgtttagaggactcgattcatggcctccaacatcgttttgtacacga
aagcccagaaggtttgacgacgagcttcccgacatctcccttgacgacctgcagtacttg
aaatcttgttgtcctctagaggtgcagccgttcctgatggttcccacgatgtgtgacttc
gagcccttaaatcgccacgtagagacgcttcacaggctggtccaagcggcacagagtgtg
gacgagatgtctcaaactattactgagctgctaagtgaacaacggatatcctttagtcag
agatccagcatgttgaccccacagtctggaagcgtacctgggaccacgacgccgaggtcc
tccaaaaccccgtcctccctgagcctgcaggggcccagctgccagccactgcttgttccc
gtcccagcaccgctagaggacctatccccagacagcatcgacgcgcaaacatttgacttt
gaaacgatcggccaccccaacatggacccagtcctgcagcagggctccctcgacttggat
tctctagcagagagccccgagtccgacttcatgtctgctgtcaacgagtttgtgatcgaa
gagaacttgacctctccgaaccccatcagtgaccccgttagccctgagatgatggtggag
tcgctgtattcgtcggtcattaacgccattgacaacaagcgcatgcaggacaccacgata
ctcgagagggagaactcgaggatcactgtgctaaaacaagtgatcgagaagtaccgatct
gctgcagaggagtcccattcgaacttcagaagcgtgaaggacgatctccatcacttgaga
ggcatggttttaaaagaacagcacgactttggctttgttttgagaaatttgaccacggag
gtgagcaacattgtggacagcatctgccaaacccagaaactggaactgaaggagcagcat
caaagtgagcttctctcccttcggcaggagcttgagaagcaggttcagacactgacggag
gaaaaccaagtgaaccagaatatcgttcgggacgtccagcgcgcaatgctggagctggag
ggactcatggagcgcaaagagaaagagctcactcagctcgagagtgagaaagagcgatgt
gcccaaacggagggtaaccagacggagaggatcaaaagcctcgagcagatgatgagcgat
caaaccgaggagatcaagaccctctcgacttcaagagactccctgaccagccagcttgaa
aatctccactttgagatcgaacgtagccagcagaagatccggcaggagttggaagatgtc
gagcggtctcacttaaaagagatggaggacaaaatgaagcgagagcacacggcgaatctg
gagaccctcgccaaggtcaaccaggaggctctggaacacctggcggccgaaaacagtgca
acgtcaagcgaggcggctgaacgccacgccgctgcactccaagagaaggaaaaccacacg
aaggacctggaggctcgggttaccgagctcgcagaactccgctgcaaagtggaggtggag
ttggccttcaaagagtccgagacggaagagttgaggctcttatttgaggaggccaaggcg
cagcaggccgagaccgtgaaggcccaggtcgaggccgcgaccgaagtcctgagcgaagag
ctggccgacgtcaaaaaacagcttcatgtcaaaaacgaggagtatgaagtggacctcgcg
gagctgaggagtctcatgaggctcgagaaggaccactgcatctcggagctggtggacgcg
cacgaggacgaggccatcttgttacggaacgagctcatctccctgcagcggcaggtccgg
gaggccgatgagaaccacgccgagcagcagcagaagcttgagcaagcgggggccctgaac
gaagaaaaagaagagcgcttccggagtttccaggaactggagcaagaattgaggactgct
atcgacgatttgcaggcagacaacgacctgctctccaaaaagatagagcaggacagacag
gcaaccgagacagatttaggaaaagagttgacctccaaagttgcgtcgccagatgctttg
aacgagttggagcagcagaagaaggacatggagaagaggctgctcgacaaaattagacaa
cttgaggatgagctccacgggcgacgatcctcaaaaagtgacgaagggttgccgctgcac
gccgagggccgcgcagacgccggagcgcctctgtctctggactcggcgctgcaggagcgg
ctgcagcaggagagggcctgcctgcagtcccagatggacctcctggagaagaagaagaac
gaggagatgcagaacctcaagacgtcgctaatcgcggagcagcagactaatttcaacact
gttctgacccgagagaagctgaagaaagagcagatcatcaatgagctgacggagaagtgg
cggacagttacccagcagcaggagaaggacaaagctctgatcgagacgctctccgaggac
cgagccagcgtcatgcaggagaagaagcacctggaggaggagctgaaccgcctgcgcggc
gccgcgctggtgtcgtccgccttcttctcgcctcgcccgtcgtcgggtcgggagacgtca
gaagccggagcgccgccggtcgccggggccttttcctgcgagcccgaagccgaccgactg
gcctctgtggcggccattcccgacgacgagcaggtggattcagctgcggaggccagcatg
gtgacggtccatgacatcgtcctgatgtccgaggagaagcagcggatcctcttgctcgag
aggactttacacatgaaggaagaagaaaacaagcgcctcagtcaaagactgatgtctcag
agcatgtcgtctgtgtcgtcacggcactcggacaagatcgccatcagagatttccaggta
ggcgatttggttcttatcatcctggatgaacggcacgacaactacgtgctgttcacggtg
ggtccgaccctctacttcctgcactcggagtctctcaccgctctggacctcaaaccagca
acggggacctcaagacggccgtgggtacttggaaaggtgatggagaaggaatattgccag
gcgaaaaaggcgcagaacaggttcaaggttcctctgggaaccaagttctaccgagtgaaa
gctgttccatggaacagaaaagtataa
DBGET
integrated database retrieval system
