KEGG   Cyclopterus lumpus (lumpfish): 117746313
Entry
117746313         CDS       T09199                                 
Symbol
viml
Name
(RefSeq) vimentin like
  KO
K07606  vimentin
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:clum00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117746313 (viml)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clum03019]
    117746313 (viml)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:clum04812]
    117746313 (viml)
   04147 Exosome [BR:clum04147]
    117746313 (viml)
Messenger RNA biogenesis [BR:clum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     117746313 (viml)
Cytoskeleton proteins [BR:clum04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     117746313 (viml)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   117746313 (viml)
  Exosomal proteins of other cancer cells
   117746313 (viml)
SSDB
Motif
Pfam: Filament Filament_head DUF1664 TolA_bind_tri DUF4160 DUF7491 Laminin_II CENP-Q
Other DBs
NCBI-GeneID: 117746313
NCBI-ProteinID: XP_034411261
Ensembl: ENSCLMG00005016035
LinkDB
Position
17:complement(11884681..11890155)
AA seq 477 aa
MQSGQEQYRAIVRNDTTKMSYKVGSQSSYRKMFGGERVGSGSGSRTSYSTRQFSSPVRSS
RVSYGLSSAPTVYATKTQRLRSSAAMPRLASENLDFSLSDAINSEFMTNRTNEKVQMQSL
NDRFANYIDKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKAR
VEVYRDNLAEDIDRLREKLQEEMSQREEAEGTMHNFRQDVDNAALARLDLERKVESLQEE
INFLKKLHDEEMLELQNQIQQQQHVHVDMEMAKPDLTAALRDVRMQYENLASKNLQESEE
WYKSKFADLTEAAARHNDALRVAKQEANDYRRQVQSLTCEVDALKGTNESMERQMREMEE
NFSLETGGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEEN
RITTPLPNFTSLNLRETMIDSKPHFEATTTRKVLIKTIETRDGQVINESTQNHDDME
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgcagtcgggacaagaacagtaccgagctattgtgagaaacgataccacaaagatgtct
tataaagtaggctcgcagtcttcttacaggaagatgttcggcggggagagagtcgggtcc
gggtccgggtccaggaccagctactccacgcgccagttctccagcccggtgcgctcctcc
cgggtatcctacgggctctcctccgccccgaccgtgtacgcgaccaagacccaaaggctc
cggagcagcgcggccatgccccgactggcctccgagaacctggacttctccctgtccgac
gccataaacagcgagttcatgacgaaccgcaccaacgagaaggtgcagatgcagtcgctt
aacgaccgcttcgccaactacatcgacaaggtccgcttcctggagcagcagaacaagatc
ttgctggcggagctggagcagctacggggcaaaggcacgtcccgggtcggagatctgtac
gaggacgagatgcgggagctgaggcgccaggtggaccagctgaccaacgagaaggcccgg
gtggaggtttaccgggataacctggcagaagacatcgacaggctgagagagaagttgcag
gaggagatgtcccagcgggaggaggctgagggcaccatgcacaatttcagacaggatgtg
gacaatgctgccctcgccagactggacctggaacggaaggtggagtcccttcaggaggaa
atcaacttcctcaagaagctgcacgatgaggaaatgttggagctgcagaaccagatccag
cagcagcagcatgtgcatgtggacatggagatggctaaacctgacctgacagctgctctg
agagacgtccgtatgcagtatgagaacctggcctccaaaaacctccaagaatctgaggaa
tggtacaaatccaagtttgctgacctcaccgaagctgcagccaggcataatgatgctctg
agagtggccaagcaagaggccaatgactacagacgccaagtgcagtcccttacttgtgag
gtggatgcccttaaaggaactaatgagtccatggagcgccagatgagggagatggaggag
aacttctccctggagacgggcggttaccaggacaccatcggccgcctggaggaggacatt
cacaacatgaaggacgagatggctcgtcacctccgggagtaccaggacctcctgaatgtc
aagatggccctggacattgagattgccacctacaggaagctgctggaaggagaggagaac
agaatcaccaccccgttgccaaacttcacatctctgaacctgagagaaacaatgattgat
tccaaaccccattttgaagctacaacaaccaggaaggttctcatcaagaccattgagacc
agggacggtcaggtgatcaacgagtcaacccagaaccacgatgacatggagtaa

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