Cyclopterus lumpus (lumpfish): 117746313
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Entry
117746313 CDS
T09199
Symbol
viml
Name
(RefSeq) vimentin like
KO
K07606
vimentin
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117746313 (viml)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117746313 (viml)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
clum04812
]
117746313 (viml)
04147 Exosome [BR:
clum04147
]
117746313 (viml)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
117746313 (viml)
Cytoskeleton proteins [BR:
clum04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
117746313 (viml)
Exosome [BR:
clum04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117746313 (viml)
Exosomal proteins of other cancer cells
117746313 (viml)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
DUF4160
DUF7491
Laminin_II
CENP-Q
Motif
Other DBs
NCBI-GeneID:
117746313
NCBI-ProteinID:
XP_034411261
Ensembl:
ENSCLMG00005016035
LinkDB
All DBs
Position
17:complement(11884681..11890155)
Genome browser
AA seq
477 aa
AA seq
DB search
MQSGQEQYRAIVRNDTTKMSYKVGSQSSYRKMFGGERVGSGSGSRTSYSTRQFSSPVRSS
RVSYGLSSAPTVYATKTQRLRSSAAMPRLASENLDFSLSDAINSEFMTNRTNEKVQMQSL
NDRFANYIDKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKAR
VEVYRDNLAEDIDRLREKLQEEMSQREEAEGTMHNFRQDVDNAALARLDLERKVESLQEE
INFLKKLHDEEMLELQNQIQQQQHVHVDMEMAKPDLTAALRDVRMQYENLASKNLQESEE
WYKSKFADLTEAAARHNDALRVAKQEANDYRRQVQSLTCEVDALKGTNESMERQMREMEE
NFSLETGGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEEN
RITTPLPNFTSLNLRETMIDSKPHFEATTTRKVLIKTIETRDGQVINESTQNHDDME
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcgggacaagaacagtaccgagctattgtgagaaacgataccacaaagatgtct
tataaagtaggctcgcagtcttcttacaggaagatgttcggcggggagagagtcgggtcc
gggtccgggtccaggaccagctactccacgcgccagttctccagcccggtgcgctcctcc
cgggtatcctacgggctctcctccgccccgaccgtgtacgcgaccaagacccaaaggctc
cggagcagcgcggccatgccccgactggcctccgagaacctggacttctccctgtccgac
gccataaacagcgagttcatgacgaaccgcaccaacgagaaggtgcagatgcagtcgctt
aacgaccgcttcgccaactacatcgacaaggtccgcttcctggagcagcagaacaagatc
ttgctggcggagctggagcagctacggggcaaaggcacgtcccgggtcggagatctgtac
gaggacgagatgcgggagctgaggcgccaggtggaccagctgaccaacgagaaggcccgg
gtggaggtttaccgggataacctggcagaagacatcgacaggctgagagagaagttgcag
gaggagatgtcccagcgggaggaggctgagggcaccatgcacaatttcagacaggatgtg
gacaatgctgccctcgccagactggacctggaacggaaggtggagtcccttcaggaggaa
atcaacttcctcaagaagctgcacgatgaggaaatgttggagctgcagaaccagatccag
cagcagcagcatgtgcatgtggacatggagatggctaaacctgacctgacagctgctctg
agagacgtccgtatgcagtatgagaacctggcctccaaaaacctccaagaatctgaggaa
tggtacaaatccaagtttgctgacctcaccgaagctgcagccaggcataatgatgctctg
agagtggccaagcaagaggccaatgactacagacgccaagtgcagtcccttacttgtgag
gtggatgcccttaaaggaactaatgagtccatggagcgccagatgagggagatggaggag
aacttctccctggagacgggcggttaccaggacaccatcggccgcctggaggaggacatt
cacaacatgaaggacgagatggctcgtcacctccgggagtaccaggacctcctgaatgtc
aagatggccctggacattgagattgccacctacaggaagctgctggaaggagaggagaac
agaatcaccaccccgttgccaaacttcacatctctgaacctgagagaaacaatgattgat
tccaaaccccattttgaagctacaacaaccaggaaggttctcatcaagaccattgagacc
agggacggtcaggtgatcaacgagtcaacccagaaccacgatgacatggagtaa
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integrated database retrieval system