Cyclopterus lumpus (lumpfish): 117746315
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Entry
117746315 CDS
T09199
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04510
Focal adhesion
clum04512
ECM-receptor interaction
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117746315
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117746315
09142 Cell motility
04820 Cytoskeleton in muscle cells
117746315
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clum04147
]
117746315
00536 Glycosaminoglycan binding proteins [BR:
clum00536
]
117746315
Exosome [BR:
clum04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117746315
Glycosaminoglycan binding proteins [BR:
clum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117746315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117746315
NCBI-ProteinID:
XP_034411263
LinkDB
All DBs
Position
17:complement(8569547..8589564)
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AA seq
1654 aa
AA seq
DB search
MGRPMLGVPLILFTVMLMGTVAKNCVCNGKSRCHCEGVKGSRGDKGFPGVAGPPGSGGRS
GSDGHPGPYGPKGSTGPDGLEGQKGDSGPEGKEGVDGSHGLPGIPGLQGPPGLPGAPGCN
GTDGEEGPPGFPGIHGLDGSAGPPGLPGPKGNPGFRGEHGLPGDTGPRGSVGFPGRSGSS
GSKGQEGTGGIPGPRGPQGRSGPRGPPGPPGRIKEFFTGSLVLKGLKGGKGDIGIKGCKG
TTGDPGYGYDTKGAKGDKGLEGPEGKSGKDGDPGRSSRVLFLXGWPGPRGDPGYAGTPGV
TGEKGDRGTPGPPGDIFGPVTAPLKGYRGDLGFPGSPGLTGRQGVEGFPGPDGPPGQSSG
IYVPGPSGPNGFPGHKGDPGEPGDIYPGLPGRDGDDGDQGPAGDQGPPGPPEDRTNRITK
GLQGMKGTRGMPGPMGYDGPYGMKGVKGETCYECIGSGFSGPPGPRGQPGIPGYNQGPGA
KGDPGFPGASGLPGRPGPIGQMGFQGPPGQKGDSYSYNTPGIKGEEGYPGQPGRPGADAL
PGFPGLPGRKGDQGPPGDSYPFPGAEGDRGYSGPPGPLGRPGPVGYPGLVGFGPAGLPGS
TGDVGVPGLPGQPGIPGQKGEPSHTHTHTNGLPGPPGFKGLPGSHGSPGNHGAPGTPGLP
GFLGQKGESGEVTFPGRLGFPGQKGDKGQTGLPGFPGRGVPGQPGSQGLPGPSGLKGEGG
PGYRGIPGPPGPPGEDGAQGPVGDPGILGLPGNPGVHGNPGFPGEKGNKGAVGPLGLPGN
KESCKGDFPGPRGPQGPDGYSGDPGPNGSPGEKGNPGLPGFGRPGVHGEPGVLGPSVPGS
RGLTGQKGIQGQHGLPGQPGLSGDPGPDGFPGYGPDGLPGITGSPGQIGAPGPDGASGSW
GPPGMNGDPGPRGPPGLLSPQPIHVFGPPGEPGNPGYPGLSGASGDTGSNGPKGQRGIDG
APGGPGQTGPPGDPGVDGLVASEGSRGSGGAPGDPGVKGHPGLKGIKGDQGISGGPGPDG
APGRTGNKGINGEPNYNGYGWPGTVGQKGEPGSTNTHVMKGQKGERGSFGPLGLPGNHGT
KGNPGPDGQNGPSGYQGPKGSGGPSGNQGQRGPNGPAGDPGLPGVSSYPGPRGNQGRDGI
PGPPGQKGDTNIIGGAPGRHGGTGQQGPPGNPGPPGLTLIGSPGPIGDRGFPGSTGVSGL
KGVPGREGACVPGSKGDHGHPGNPGYRGLPGLPGPTLPGLKGDRGDSGLTGAQGFSGPRG
DTGPQGPPGPMGRPGGVGPRGDSGPPGIYGLPGVKGDPGHISGPPGPPGIKGFPGRPGVK
GEPASVRATYEPGPPGSPGPSGNRGAPGHTGPSGRLGLPGQSGVKGKRGSSPDGHPGFTG
HKGDKGIAGLPGSEGRTGNSGNKGQPGLPGKGGPGYVNSFLIARHSQSMSVPDCPLGTSL
IYSGYSFLFINGNERAHGQDLGTMGSCLPRFTTMPFLFCDTESNCRYASRNDYSYWLSTD
TPMPTNMASITGDTLASYISRCSVCETTSNVIAIHSQTTLIPECPRDWESIWTGYSFVMQ
TGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDSYSYWLASLDPDSMFSKPV
PHTVKGPSLQSVISRCRVCRKPWQPTDDKRGDNF
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggccaatgttgggagtccctctgatcctgtttactgtgatgctgatgggcact
gtggccaaaaattgtgtgtgcaatggaaaatcaaggtgccactgtgaaggagtgaaaggc
agcaggggagacaaaggttttccaggagttgcaggtcccccagggtcagggggccgttct
ggatcagatggtcatcctgggccttatggaccaaagggcagcactgggcctgatggactg
gaggggcaaaaaggcgattcgggacctgagggcaaagaaggagttgatgggtctcatggt
ttaccgggtatcccaggtttacaagggcctccaggactcccaggggcccccggctgcaat
ggaactgatggagaagaggggcctcctgggtttcccggcatccatggccttgatggaagt
gcaggtccacctggtctgcctggacctaagggaaatccaggtttccgtggagagcatgga
ctaccgggggacactggaccaaggggctctgttgggtttcctggtcgttctggatcctca
ggatcaaagggtcaagaaggcacaggcggtatcccaggacctcgtggaccacaggggaga
tcaggaccacgaggcccaccggggccaccgggtcgaatcaaggagtttttcacagggagt
ctcgtgttgaagggtctaaaaggaggcaaaggagacataggaataaaaggatgcaagggt
acaacaggggacccaggttatggctatgacaccaaaggagcaaagggagacaaaggtctg
gagggtccagaaggaaagtcagggaaggatggcgatcctggacgatcatctagggtactt
tttctttagggatggcctggccccagaggtgatccaggatatgcggggacaccaggagtg
acgggtgaaaagggagatagaggtacccctggtccacctggagatatatttggccctgtg
actgcgccactcaaagggtaccgcggagatcttggttttccaggctcacctgggctcacc
ggacgtcaaggtgttgaaggattccctggacctgatggacctccaggccagtcatctggg
atttatgtgccaggccctagtggtcccaatgggtttccaggccacaaaggggaccctggg
gagccgggggatatttatccaggactcccaggtcgagatggggatgatggggatcaaggg
cctgctggggatcaaggcccacctggacctcctgaagacagaactaacaggattacgaaa
ggtctccaaggaatgaagggaacacgaggtatgcctggaccgatgggatatgatgggccg
tatggaatgaaaggagtgaagggggagacctgttatgagtgtatcggatcaggattctct
gggccaccgggtccacgaggccaacctggcatccctggatataatcaaggaccaggtgct
aaaggtgacccaggcttcccaggagctagtggcttacctggaagaccaggtcctattggt
caaatgggatttcaaggccctccaggacaaaagggagactcatattcctacaacactcct
gggataaagggagaggaaggatacccgggacagcctggcaggcctggtgcagatgccctc
cctgggtttcctggactaccaggtcgcaaaggcgaccaagggcctccaggggattcgtat
cccttccctggtgcagagggagaccgtggttactcagggccacccgggcctttaggtaga
ccgggaccagttggctaccctgggcttgtgggatttgggcctgctggacttccaggaagt
acgggagatgttggggtgcctggcctgccagggcaacctgggattccaggccagaaaggt
gaacctagccacacccacacccacaccaatggactccctggaccacctggatttaaaggt
ctgcctggttcacatggaagcccaggtaatcacggagcaccaggtaccccaggattacca
ggtttcctaggacagaaaggagaaagtggtgaggttacatttcctggaaggctgggattc
ccaggacagaaaggcgacaaggggcaaacaggtctcccaggctttcctgggaggggcgtg
cctggtcagccaggttcacaaggccttcctggtccttcaggactgaagggtgagggtggg
cctggatatcgtggtatcccaggaccccctgggcctcctggagaagatggagctcagggg
cctgtaggagatccagggatccttggtctacctgggaacccaggagtacatggaaatcct
ggttttccaggagaaaagggaaataaaggtgctgtaggtcccctaggactacctggaaat
aaagagtcatgtaaaggtgattttcctggtccaaggggaccacaaggaccagatgggtat
tcaggagatccaggacccaatggctcccccggtgagaaggggaacccaggtttgccaggg
tttggtcgtcctggcgtccacggtgaacctggtgttcttgggccatcagtgcccggttca
cgtgggctgacaggacaaaaagggattcagggacaacatggcctgcccggtcaaccagga
ctgagtggagaccctggaccagatgggttcccaggatatggaccagatgggttgcctgga
attacaggatcaccaggccaaataggtgcccccggcccagatggagccagtggttcctgg
ggtccaccaggtatgaatggcgacccaggtcccagaggtcctccaggccttctgtcacca
caaccaatacatgtgtttgggcccccgggagaacctggcaatccaggttaccctggccta
tccggtgccagtggagatactggaagtaatggaccaaaagggcagagagggatagatgga
gctccaggcggtcctggacaaacaggtccccctggtgatccaggtgttgatggtctagtt
gcctcagaaggaagtcgaggatctggtggagctccaggagaccctggggtcaaagggcat
ccaggcctaaagggaataaaaggagatcaaggaatctctggagggccaggtccagatggt
gcaccaggtcgaaccggtaacaaaggcattaacggagagccaaattacaatggatatgga
tggcctggaacagtaggacaaaagggtgaaccaggatcgaccaatactcatgtgatgaag
ggtcagaaaggggaacgtggttcttttggacctctaggtttaccaggaaaccatggaacc
aaaggaaacccagggcctgatggacaaaatggtccatctggctatcaagggcctaaaggt
tcaggtggaccttcaggaaaccaaggacagagaggacccaatggacctgcaggggaccca
ggcctgccgggtgtcagtagttatccaggtcctagaggcaatcagggccgggatggaatc
cctggaccaccggggcagaagggagacactaacattataggaggggcacctggtaggcat
gggggcacaggtcaacaaggtcctcccggaaaccctggtccccctggcttgactcttata
gggagtcctggaccaataggagacagaggatttccaggttcaactggggtctctggtctg
aagggagtaccaggaagggaaggggcttgtgttcctgggtcaaaaggagaccacggtcat
cctggcaatcctggctatcgcggtttacctggccttccaggtcccacactaccgggctta
aaaggagacagaggggactcaggtcttacaggagcccaaggctttagcggaccccgagga
gatacaggccctcaaggaccaccgggtccaatgggcagacctggaggtgtgggaccaaga
ggtgattctggtcctcctggaatctatgggcttcctggagtcaagggagaccctggacac
atctctggccctcctggtccacctgggattaaaggttttcctggacgacctggcgtaaaa
ggtgaaccagcatctgtcagggcgacgtatgaaccaggacctcctggctcacctggtccc
tctggcaaccgaggagccccaggacacactggaccatcaggacgattaggcctaccaggt
cagtcaggcgtcaaaggcaagcgtggttccagcccagatggccatcctggatttactgga
cacaaaggagacaaaggaatagcaggactgccaggttcagaaggcagaacgggaaactca
ggcaacaagggtcagccggggttgccaggcaaaggtggtccaggttatgttaacagtttc
ctgatagccagacacagtcaaagcatgagtgtccctgactgccctcttggcaccagcctc
atctactctggttactccttcctcttcatcaacggaaatgagagagctcatggtcaggac
cttggcaccatgggaagctgtctccctcgtttcaccaccatgcccttcctgttctgtgac
acggaaagtaactgccgctatgcttctcgtaacgactactcctactggttgtccactgac
actccaatgcctaccaacatggcttccatcacaggggatacactggcctcctacatcagc
aggtgctcagtgtgtgaaaccacctccaatgtcatagccatccacagccagacaactctg
atacctgaatgtccccgagactgggaatcaatatggactggatactcttttgtcatgcaa
acgggtgctggagcagagggctcctcccagccgctggtttctcctggctcttgtctggaa
agtttccgccaagtgcccttcatcgagtgtcatggcagaggaacttgcaactactaccct
gattcctatagctactggttggcctccctagaccccgacagcatgtttagtaaacctgtt
cctcacacggtgaagggaccttctctacaaagtgtcatcagccgttgtcgtgtctgcagg
aaaccatggcaaccaacagatgacaaacgtggggacaatttttaa
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