Cyclopterus lumpus (lumpfish): 117746364
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Entry
117746364 CDS
T09199
Symbol
runx1
Name
(RefSeq) runt-related transcription factor 1 isoform X1
KO
K08367
runt-related transcription factor 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117746364 (runx1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117746364 (runx1)
Transcription factors [BR:
clum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
117746364 (runx1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Runt
RunxI
CD52
Motif
Other DBs
NCBI-GeneID:
117746364
NCBI-ProteinID:
XP_034411337
Ensembl:
ENSCLMG00005008089
LinkDB
All DBs
Position
2:complement(12592351..12651345)
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AA seq
508 aa
AA seq
DB search
MNPGTFSGSGPLSWAMYLMRKGRSGSALFEPAPGRRYTSPSTTLASGGKMAEALPLGTQE
AGGAALVGKLRMADRGMVEVISDHPGELVKTDSPNFLCSVLPTHWRCNKTLPIAFKVVAL
GDTPDGTLVTVMAGNDENFSAELRNATAAIKNQVARFNDLRFVGRSGRGKSFTLTITVFT
NPPQVATYQRAIKITVDGPREPRRHRQKMDEVKAGSLAFSERLTELEQLRRSSMRVTPPH
HHHHPHHHHHPHSASSRQSAALNSATFSSPTHAQITADSRQMQPSPSWSYDQSYPYLGQI
TTPSVHTANPLSPGRPSLSDLSSRLTGPDLTAFGDPRMTLERPFTSLPSLPDSRFSDPRV
HYPSSAAAFTYTPSHNAVSNGALGITMATAMATAPTGRYHTYLPPPYPANAPHQAQNGPF
QSTSSPYHLYYSTAAGSYQFSMMAGGGGGGDSRSPPRILPPCTNASTGSSLLHPSLPNQN
EGVGVEVESSHSSSPTNMAAAEAVWRPY
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaacccggggacgttctccggctccgggcccctgtcctgggccatgtacctgatgagg
aagggccgctccggcagcgctctctttgaaccagccccgggccggcgctacacctccccc
tccaccaccctggcctcggggggaaagatggccgaggccctgccgctgggcacccaggag
gctgggggggccgctctggtgggcaagctgcgcatggcggaccgcggcatggtggaggtg
atctccgaccatccaggtgagctggtgaagaccgacagccccaacttcctgtgctcggtg
ctgcccacccactggaggtgcaacaagacgctgcccattgccttcaaggtggttgccctg
ggcgacaccccggatggcaccctggtgacggtgatggcaggaaacgatgagaacttctcc
gctgagctccgcaacgccaccgccgccatcaagaaccaggtggccaggttcaacgacctg
cgcttcgtgggccgcagtggaagagggaagagcttcaccctcaccatcacggtgttcacc
aaccctcctcaggtggccacgtaccagagagccattaagatcacagtggacggccctcga
gagccacggcgccatcggcagaagatggacgaagtcaaagctggctccctggctttctcc
gagaggctgacagagctggagcagctgaggcggagctcgatgagggtgacgcctcctcac
caccatcatcatcctcatcatcatcatcatccacactccgccagcagccgccaatctgca
gcgctcaactcggccaccttctccagcccgacacacgctcagataactgctgactccaga
cagatgcagccgtctccgtcttggtcctacgaccaatcgtacccctacctcggccagata
accacgcccagcgtccacacggccaatcccctttcacctggtcggccatcgctcagcgac
ttgtcctcacgactcacaggtcctgacctcacagccttcggcgaccccaggatgacctta
gaacgacctttcacctcccttccctccttgcctgactctcgcttctccgacccccgggtc
cactacccttcttcagcggccgccttcacctacaccccctctcacaacgccgtatctaac
ggcgccctcggcatcaccatggcaacagccatggcgaccgctccgacggggaggtatcac
acctacctgcctccaccctacccggcgaacgccccgcaccaggctcagaacgggcccttt
cagtccacctcctcgccgtaccacctgtactactccaccgccgccggctcgtaccagttc
tccatgatggccgggggaggcggcggcggtgactcgcgctcccctccgaggatcctgccg
ccgtgcaccaacgcctccacaggctcctccctcctgcacccctctttgcccaatcagaat
gaaggcgtgggcgtagaggtggagtcgagccacagcagctccccgacaaacatggccgct
gccgaagcggtctggagaccttactga
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