Cyclopterus lumpus (lumpfish): 117746413
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Entry
117746413 CDS
T09199
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03030
DNA replication
clum03410
Base excision repair
clum03420
Nucleotide excision repair
clum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117746413 (lig1)
03410 Base excision repair
117746413 (lig1)
03420 Nucleotide excision repair
117746413 (lig1)
03430 Mismatch repair
117746413 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clum03032
]
117746413 (lig1)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117746413 (lig1)
Enzymes [BR:
clum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117746413 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
117746413 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117746413 (lig1)
DNA replication proteins [BR:
clum03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117746413 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117746413 (lig1)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117746413 (lig1)
NER (nucleotide excision repair)
Other NER factors
117746413 (lig1)
MMR (mismatch excision repair)
Other MMR factors
117746413 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
Motif
Other DBs
NCBI-GeneID:
117746413
NCBI-ProteinID:
XP_034411402
LinkDB
All DBs
Position
17:21474211..21499325
Genome browser
AA seq
749 aa
AA seq
DB search
MQRSIASFFQPKCKVTDVQKVTAVQKVTDVQKVKAVQRTSAPDPVKKPAKSPLKVQNGAR
EADSPVKKVAKRSRQILDSDEDEEEEDAPGVKEQVAAEAPGDEGAVDEKEKKDDVFKAVP
TPLSPPPAPVTPASSASPGTPSSTSPSEIVKRKTARKMFPKRKLDESRSRRDEAEAPEEQ
GQQNKRPRVESGAGSAEEPMEEGAKEESVEEAVTEANGPEEEVKEEEVKEEEVKKKKEEE
EERKTSDEKVKKAEGEEKKNKAKEKTDDEKRPVVAKKKKKMMEEEEEEEVKVKVKKDTPE
QEESPKSQTARKQKDKEPLKKAPISSFFAPRKAAAKTEKPEKDDGEEEEGEKKKTTSGER
KTSGERKTSAEESKDAKGEATSGPTDYNPTRAGYHPVDHACWRRGQKVPYLAVARTFEKI
EEESGRLRNIETLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGIGETVLMKAVA
QATGRQLDKIKAEAQEKGDLGLVAESSRSNQRTMFQPAGLTAGGVFRKLKEIASMSGNSA
MNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPA
VLDAGKGMSAESRRAWIEEKSLILKQTYCEMPNYDVLLPVLLKEGIDELPNHCKLTPGVP
LRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYP
DIISRIPKPGSMDLCALEASGKKVMKIIL
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagtgtaaggtcacagacgttcagaag
gtcacggccgtccagaaggtcacggacgttcagaaggtcaaggccgtccagaggacatct
gctcctgaccccgtgaagaaacccgccaaaagccccctgaaggtgcagaacggcgcccgg
gaagcggattcgcccgtcaagaaggtcgccaaacgcagccgccagatcctggacagcgac
gaggacgaggaggaggaagacgctccgggggttaaagagcaagtcgccgccgaggcaccg
ggagacgaaggggctgtggatgaaaaagaaaagaaggatgacgtcttcaaggccgttccc
acgccgctgtctcctccgcccgcccccgtgacgccggcctcttcggcttcgcccggcacc
ccgagctccacctccccctcggagatcgtcaagcgcaagaccgcgaggaagatgttcccc
aagaggaagctggatgagagcaggagccggagagacgaggcggaggccccggaggagcag
ggtcagcaaaacaaacgcccccgcgtggagagcggcgcagggagcgccgaggaacccatg
gaggaaggggccaaggaagagagtgttgaagaggcagtgaccgaggctaacggcccagag
gaggaggtgaaggaggaggaggtgaaggaggaagaggtgaagaagaagaaggaggaggag
gaggagagaaagacctctgatgagaaagtaaagaaagctgaaggggaggaaaagaaaaat
aaagcaaaggagaagactgatgatgagaaaaggcccgttgttgccaagaagaagaagaag
atgatggaggaggaggaggaggaggaggtcaaggtcaaggtcaaaaaggacacgcccgag
caagaagagagcccaaaaagtcaaacggcgagaaagcagaaagataaggagccgctcaag
aaggctcccatcagcagtttctttgctcccaggaaagctgcagcgaagacggagaaaccg
gagaaggacgacggggaggaggaggagggggagaagaagaagacgacgagcggcgagagg
aagacgagcggcgagaggaagacttcggcggaggagagcaaagacgccaaaggagaggcg
acctcgggaccaacggactacaacccgaccagggccggctaccatcccgtagaccacgcc
tgctggaggcggggccaaaaagtgccgtacctggcggtggctcgcaccttcgagaagatt
gaagaggaatctggcaggctgaggaacatcgagacgctgtccaacctgctgcgctccgtg
ctgctgctctctccagacgacctgttgtgctgtgtgtacctgtgtctgaaccagctgggt
ccggcctacctggggatggagctcggcatcggcgagacggtgctgatgaaagctgttgct
caagcgaccgggcgacaattggacaaaatcaaggcggaggcgcaggagaagggggacctg
ggcctcgtggccgagagttcccgtagcaaccagcgcacgatgttccagccggccggtctg
acggcggggggcgtgttcaggaaactgaaggaaatcgccagcatgagcgggaactcggcc
atgaataagaaaatcgacatcatcaaaggcctctttgtggcgtgccgcttttcagaggcc
cgctacatagtcaggtccctggctgggaagctgagaataggcctggctgagcagagtgtc
ctatcagctctaagccaggcggtgtgcctgaccccccctggacaaggtttcccccctgcc
gtgctcgacgccgggaagggaatgagcgccgagagccggcgggcctggatcgaagagaag
agcctcattctcaaacagacgtactgcgagatgcccaattacgacgtcctcctccccgtc
ctgctaaaagaaggcatagacgagctgcccaatcactgcaagctgactccaggtgtgccc
ctgaggcccatgctggcccaccccaccaaaggcgtcggcgaggtgatgaagcgcttcgac
gaggcggcgttcacctgcgagtacaaatacgacggagagcgcgcgcagattcacattctg
gagagcggcgaggttcgagtgttcagccgcaaccaggaagacaacaccagcaagtacccc
gatatcatctcccgcattcctaagccggggagcatggacctgtgtgctctggaggcctca
ggaaagaaagtcatgaagattattctttaa
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