Cyclopterus lumpus (lumpfish): 117746535
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Entry
117746535 CDS
T09199
Symbol
depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
117746535 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117746535 (depdc5)
Membrane trafficking [BR:
clum04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
117746535 (depdc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
IML1_N
DEP
Motif
Other DBs
NCBI-GeneID:
117746535
NCBI-ProteinID:
XP_034411616
Ensembl:
ENSCLMG00005007666
LinkDB
All DBs
Position
17:1457337..1483111
Genome browser
AA seq
1584 aa
AA seq
DB search
MKTNKSYKLVLHKKGFGGSDDELVVNPKVFPQVSLRDIIEIAHPTDEYSPLLLQVKSLKE
DLQKETISVDQTVAQAFKLRAYQDVIVNIVDPKDVTLDLVELTFKDQYIGRGDMWRLKKS
LVSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQMSCE
MWDFDIYGDLYFEKAVNGFLSDLFAKWKEKNCSHEVTVVLFSRTFYNAKTVDEFPEILRG
SIRQDHEGHFYEDFYRVVAQNERRDEWTSLLVTIKKLFIQYPVLVRLKEADGFPPGYNST
AAQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDN
GIGVDLVCMGEQPLHAVPLFKLHNRTTPGDSRVGDDYNLPHWINHSFYTSKSQNSCSSFT
PRIKLAGRKLHAEKFKSSKEHTLCAPKDSENSLPIQVDYDAYDAQVFRLPGPSRIQRSTN
FRMSRDKETSGRKSWGSVDVSAGIGVSPPVRSGGPEEQRSLASDDSLGPVSNMLLIPRIP
LVQYEVSSSLGYTSTRELLEKMMDSQRDSSAPGRFTVGSAESTLHIRPGGYTPQRALINP
FTPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSQQKDPAHTSAELLE
LAYHEATGRRTTSRHAGENGLYVSGGMEELTGSPGSHNSGALNTLQDLSLSGADPTLLLS
APPTVPSFCCTVGVDWKSLTTPACLPLTTDYFPDRQALQNDYTEGCYDLLPHSDLERREY
EAPVMSASQVFEEFICQRLMQGYQIIVQTNNRKPQPTVATPLGSSPLYSRGLVSLRRAEE
EETVYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESAQIQYSYSLCPPHSDAHFVSCWVE
FGHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPAGGARRVADGEGHWDVY
GEGAGAGLGGSGDWVLLDGFIRFLEGLNRIRRRHRSDRIIRQKGTAMKGLQVTSPLPPHP
TEPLVPPHGKKGTSALSALLEMEQNQKSLEDQQQAKPSTAASEPSSVATAPTYVDSPRKD
AAFILDFIRSPRSSYIYHSQLPAEASDVAEKGVQPAATAAGETAASSSTSDTSGQSAVGA
LSLSSSSTLMEILEAIKHPTTGVQLLPEQKGLPLNCFISAEVIHWLVNNVEGVATQGMAV
DIMQKMLDEGVVGHASGDAMRTFVYGFYFYRIVGEKDGTPAPTCPTSQLPSMATGVWSAA
ALEDFALFQRKWFEVAFVLEEWRPCDLPAFLLPWLPSRPASYASRHSSFSRSFGGRSQAA
ALLAATVPEQKTVTLDVDVNNRSDRTEWCSCYYHGNFSLNSAFEIKLHWMAVTAAVLFEM
VQGWHRRAASCGFLLVPVLEVPFALTSYLYGDPLRAQLFIPLNVHCLLKNASDNLFEGFE
PETYWDRMQLFQEAILYRFGFVHDKFSASSSNFPSENKPQYIHVTGTVFLQLPYSKRKYS
SGQQRRRRNSTTSNSQGPYGGEERVGYYWAYNTMLTKAWRTGVLGDERLADRLLRDFTDF
CANKDNRLLHLWDGCQEKMNASAP
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccaacaagtcatacaagcttgtgcttcacaagaaagggttcggtggaagtgat
gacgagttggttgtcaacccaaaggttttccctcaagtcagcctgagggatatcatcgag
atcgcacaccccaccgatgaatacagtcctctcctgcttcaagtgaagagcctgaaagag
gaccttcagaaagagacgatcagtgtggaccagaccgtagcacaagccttcaagctgcgt
gcctaccaggatgtcattgttaacattgtcgacccaaaggatgtgacactggacctggtg
gagctgacgttcaaggaccagtacatcggcagaggagacatgtggagactaaagaagagt
ctggtgagcacgtgtgcttatgtgacgcagaaagtggagtttgcaggaatcagagcccag
gccagtgaactctgggtgaagggagagaaagtgacctgcgggtacatcagtgaagacacc
agggtggtgttcagatctacatctgcaatggtgtacatctttatccagatgagctgtgag
atgtgggactttgacatctatggtgatctctactttgagaaggctgtcaatggtttcctg
tcagaccttttcgccaagtggaaggagaagaattgcagccatgaggtgacagttgtactt
ttctcccgtactttctacaatgccaaaactgttgatgaatttcctgagattctgagaggg
tctatcagacaggatcacgaaggacatttttatgaagacttttacagggtcgtggcccag
aatgagagacgggatgagtggacatcattactagtcacgatcaagaagctcttcattcag
tatcctgtcctggtgcggctgaaagaagcagatggttttcctcctggttacaactcaact
gctgctcaaggaaactacctggaggccattaacctttctttcaacgtgtttgacaagcac
tacatcaaccgtaactttgaccgcaccggccagatgtcagtggtcatcactcccggggtg
ggagtgtttgaagtcgaccgtctgcttatgattctcaccaaacagcgtatgattgacaac
ggtattggggtagacttggtgtgcatgggggagcagccattgcacgcagtaccattattc
aagctgcacaacaggacaacacctggagactctcgtgtgggggacgactacaaccttcct
cattggatcaaccacagcttctacacctccaaaagtcagaactcttgcagttccttcacc
cctcgaatcaaactggctggccgcaagcttcatgctgagaaattcaagagcagcaaagaa
cacactctctgtgcaccaaaggactctgaaaacagcctgcctattcaggtggactacgac
gcctacgatgctcaggtgttcagactgcctggtccttcacggattcagaggagcaccaac
ttcaggatgagtcgagacaaagagacgagtgggaggaagagctggggctcggtggacgtc
agtgcaggcataggcgtgtctcctcctgttcgctctggaggtccagaggaacagcgtagc
ctggcctctgatgatagtctgggccctgtgtccaacatgctgctcataccccgcattcct
ctcgtccagtatgaagtcagcagctccctgggatacaccagcaccagagagttgttggag
aagatgatggactctcagcgggactccagtgccccgggcaggttcacagttggaagcgct
gagtccactttgcacatccgcccaggaggttacacccctcagagagcactcataaacccc
ttcaccccatccagaatgcccatgaagctcacctccaaccgtcggcggtggatgcacacc
ttccctgtcggtccatctggagaagcaatccagatccatcatcagaccagacagaacatg
gccgaactgcagggcagccagcagaaagatcccgcccacacctctgctgagctgctggag
ctggcctatcacgaggccactggaaggcgcacaacctctaggcatgcaggagagaacggc
ctttacgttagtggagggatggaagagttgactggaagtccaggaagccacaacagtgga
gctctcaacacgttgcaagacttatccctgagcggtgccgatccaaccctgctgctgtct
gcgcccccgacagtgcccagcttctgctgcacagtgggggtggactggaagtctctgacc
acgccagcctgcctgcccctcaccaccgactacttccccgatcgccaggcgctccagaac
gactacaccgaaggctgctacgacctgctgccccacagtgacctggagaggcgggagtac
gaagccccagtgatgagtgcgtcccaggtgtttgaggagtttatctgtcaaaggttaatg
caaggctaccagatcatcgtccaaaccaacaacaggaaaccacagcccactgtggccaca
ccccttggcagcagtcctctatattctagaggtttggtctctctgcgtcgagcagaggag
gaggagaccgtttactggctcagtatgggccggaccttccataaggtttgcctcaaagac
aagatcatcacagtcactcgctacctgcccaagtacccgtacgagtcggcacagatccag
tacagctacagcctgtgtccaccacattctgatgctcactttgtgtcctgctgggtggag
tttggccacgagagactggaggaatacaagtggaactacctggaccagtacatctgctct
gctggctctgaggacttcagtttgatcgactctctgaagttctggaggactcgcttcctc
ctgctgccagccggaggagctaggcgggtggcagacggggaggggcactgggatgtttat
ggggagggagcaggtgccgggctgggtggcagcggggactgggtcctgctggatggcttc
atccgtttcctggagggtctgaaccgcattcggcgtcgccaccgctccgacaggatcatc
agacagaagggcacagcaatgaaaggactgcaggtcaccagtcctctcccaccgcacccc
acagagcctttggtgcccccacacggcaaaaaaggcacatcggccttatcggccttactg
gagatggagcagaaccagaagtctctggaggatcagcagcaggcgaagccctcaacagct
gccagtgagccctcaagtgttgccacagcgcccacatatgtggacagcccccgcaaggac
gctgcctttattttggattttatacgtagccctcgctcctcctacatctatcactctcag
ctgcctgctgaagccagcgatgttgcagagaaaggagtgcagccagcagcgacggctgca
ggggagactgcagccagcagcagcacctcagacaccagtgggcagtctgcagtgggagcc
ctttctctgtcctcttcctcaacactcatggagatcctggaggccatcaaacatcccacg
acgggtgtgcagctgctgccggagcagaaaggcctcccactcaactgcttcattagcgca
gaggtcattcattggctggttaacaatgtagagggcgtggccacacaggggatggctgtg
gatatcatgcagaagatgctggatgaaggtgtggtgggccacgcttctggagacgccatg
cgcaccttcgtctacggattctacttctacaggatcgtgggagagaaggatggtacacct
gctcctacttgcccgacctcccagcttccctccatggcgactggggtctggtccgctgca
gccctggaggactttgctctgttccagaggaagtggttcgaggtggcctttgtgctggag
gagtggcgaccctgcgacctccccgccttcctgctgccctggctgcccagccggccggcc
tcctacgcaagtaggcacagctccttcagccgcagctttggaggacgcagccaggccgcc
gcactgctagctgctacagtcccggagcagaagacggtcactctggacgtggacgtcaac
aaccgcagtgaccgaaccgagtggtgcagctgttattaccacgggaacttctccctcaac
tctgcttttgagatcaagctgcactggatggccgtgactgctgcagtgctctttgagatg
gtccaagggtggcacaggagagcggcctcctgcggcttcctgctggtccccgtgctggag
gttccattcgcgctgacgtcgtacctgtacggagatcccctgagagcccagctcttcatc
cctctgaacgtccactgcctgctgaagaacgccagcgacaacctgttcgaaggttttgaa
ccagagacgtactgggaccggatgcagctcttccaggaagccatactctacagatttggc
ttcgtgcacgacaagttttctgcttcttcttctaatttcccctctgagaacaagccacag
tacatccacgtgacaggcaccgtgttcctgcagctgccgtactcaaagaggaagtactcg
agcgggcagcagcgcagacgcagaaactccaccacctccaacagccagggcccgtatggc
ggcgaggagcgcgtcgggtactactgggcctacaacaccatgctgaccaaggcctggagg
acgggcgtgcttggcgacgagaggctcgccgaccgtctgctcagggacttcacggacttc
tgcgccaacaaggacaaccggctgctccacctgtgggacggctgccaggagaagatgaac
gccagcgctccctga
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integrated database retrieval system
