Cyclopterus lumpus (lumpfish): 117746635
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Entry
117746635 CDS
T09199
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117746635 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117746635 (prpf38b)
Spliceosome [BR:
clum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117746635 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
117746635 (prpf38b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
117746635
NCBI-ProteinID:
XP_034411791
Ensembl:
ENSCLMG00005006394
UniProt:
A0A8C2X4G6
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All DBs
Position
17:complement(9553214..9558309)
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AA seq
483 aa
AA seq
DB search
MANVGNQLPTQAVSKPAPGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVTHAEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTR
KQLMGLITHTDSPYIRALGFMYIRYTQPPADLVEWYDGFLDDEEELDVKAGGGCVMSVGE
MLRSFLTKLEWFSTLFPRIPVPVQKLIDQQMKARPRKVVQKEPQEEEEEEEEEPAETEAG
RQVERRRSRTPRRTPSPRKSPKRSRSRSHHREKERHGPSFDRELDRERDRQKKEREGRDR
GERGDRERRRSRSADRNQDRKERKKSRSGSRDRRNERRDKERDCGDDKSKRKDREHHKDR
GAERERSKDKKSRGETDDKKSRGETDDKKSRGETDDRRHKDDRERHREERKAKKLSRSRS
KERKHKSGGEEKSRKGELSHNRDRDRERDGEQRSHKRSRSKEKSHHQRESSNDHSKHRSH
STE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgtcgggaaccagctaccaacacaggccgtgagcaagcctgcaccagggaaa
catggcaatgtattgcccctgtggggcaacgagaagaccatgaacctcaacccaatgatt
cttacaaatgtactgtcgtcgccgtatttcaaagttcagctttatgaacttaagacgtac
catgaagttgtggatgaaatctacttcaaggtgacccatgctgaaccttgggaaaaaggc
agcagaaagaccgcgggtcagactggaatgtgcggaggggtgcgtggagttgggacaggc
ggtattgtgtccactgctttctgtcttctatacaaactgtttactctcaagttgactcgt
aaacagctgatgggtctgatcactcatacagactctccatacatcagagcacttggattc
atgtacataagatacactcagcccccagcagatttggtagaatggtacgacggtttcctg
gatgatgaggaggagcttgatgtgaaggcaggaggtggctgtgtcatgtccgttggggag
atgttgcgctccttcttgaccaaactggagtggttctccactctgttcccccgtatccca
gtgcctgtgcagaagcttattgaccagcagatgaaggctcggcctcggaaggttgttcag
aaggagccgcaggaggaggaggaggaggaggaggaggaacctgcagagaccgaggcaggg
aggcaagtagaacgccgccgctccaggacacccaggcggacaccgagcccccggaagtca
cccaagcggtcacggagcaggagccatcaccgtgagaaagaacgccacggccccagcttt
gaccgagagctggatagggagcgtgaccgccagaagaaggagagggagggcagggatagg
ggggagcgaggggacagggagagacgacggtcccgcagtgcagacaggaatcaagaccgc
aaagagcgtaaaaaaagtcgcagcggcagccgggaccgaagaaacgaacgtagagacaaa
gaaagagactgcggtgatgacaagagcaagaggaaggacagggaacaccacaaagataga
ggtgctgagagggagaggtccaaggacaaaaagagcaggggagagaccgatgacaaaaag
agcaggggagagaccgatgacaaaaagagcaggggagagaccgatgacaggaggcataaa
gacgacagggagaggcacagagaagagaggaaggccaaaaagttgagtcggagtcgaagc
aaggagaggaagcacaagagtgggggtgaagagaagagtaggaaaggagagctcagccat
aacagagatagagacagggagagagatggagaacagcgttctcacaaacgtagtcgtagc
aaagagaagagccaccatcagcgagagtccagtaatgaccatagtaaacataggagtcat
agcactgagtaa
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integrated database retrieval system
