Cyclopterus lumpus (lumpfish): 117746690
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Entry
117746690 CDS
T09199
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
clum03015
mRNA surveillance pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117746690 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
117746690 (acin1a)
03015 mRNA surveillance pathway
117746690 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117746690 (acin1a)
03041 Spliceosome [BR:
clum03041
]
117746690 (acin1a)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117746690 (acin1a)
Spliceosome [BR:
clum03041
]
Complex C
Other components
EJC/TREX
117746690 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
117746690
NCBI-ProteinID:
XP_034411875
Ensembl:
ENSCLMG00005009080
UniProt:
A0A8C2XFJ6
LinkDB
All DBs
Position
17:5856447..5870761
Genome browser
AA seq
1713 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALVKRLKGALMLENLQRTSTAH
IGLQPNSHIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYDTNEQEDHTEVNNSTSCP
PQAQDAAPALVEQNKPPGPSGVDGLFGAVNEDEGNRDQEADLPCPPASGSMAMRVPGGED
RPEKGSASNEAAADSDDDDSDDGDEDGDDDDWESGARRRGHREPATAPTTRERSGASCQP
PQQHMPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPARRSSSTSSSGSSSS
GSRSSSPEPQRSGHAERKPGPLTLLARKMESEGAFSGAGWHRAGGEGERQDGSSLATSFL
CRGLPEGLVSAITHTANTAGHVSFPTIPGINQGLSGAHSAHIQLPVSVLKATATEERDTE
IERERALELERQEKQRKLEQERAMEEERERALAMEREQRERALEKERIERQQAIEREEQE
KALQRERELALERERQERERALAKEREERERALAQERALEMERQKELERQRALERERRER
EEMERIKELEREEMERIKELERSKALEQEKKERERALEQERLQRERVLEAERKEKERIER
EKALEQERLERERLERQRALEQERLERERAFEQERLEMERVLEQERLERAKALEQQRLER
EKVLAKERLEREKALEQERIDRERALEQERLKQERALEQQRLELERKENERIEREKALAQ
ERIEKEKALDREREEKERFKREAALEEQRKEKERLERESALQQEKLERERALEKERKEKE
RALEHERLEKEKAVQKEREEQERALEQEKERARMAERERESHLPPSKRGREIGLSALPTP
PAFSVGPGRKSSTEAGEQDEDHASKSRGEAAESSALMSPTPPLPQSSFKKFRFLRDTPIQ
LQSSSPPMVIKRPRNFSDTPQPRVLPVSSLTDVGERREVELQSSTEQEDPQKGTKQEAVA
RAPGAVEAAPAKEPAVGTTLVQSPKKEKATSLVSEDKQKESTKKVEESSPANQLATAQRR
GRDAKKEEKHARRRSSSNDSSSSESDSGSSSSGSSSSSSSSQEKTCPTTRGRREKKPDKD
TSPQHRVTLETKAGGLKETPKASPYKRDMSVEKSNTAAVGDTHTMKTLKEAPSREDSQGK
RKDNEGEAETDKKRQVKETAMAEPEKLPETSEETPKAFSARKISISSSKLSPGSAEGEQD
CGAAAGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIGPCLGQEAAVDLHPEEAVLSGA
EDEERERSDQDLQIRRTVTQVVHLESQENGQEESKRSRHEESESDDPQGDGERTQVHEEK
METPFPGAMETQSPSHISHDVEVNTVTASDTLIRRSISQQKTGVSITIDDPVRATRQPSP
PRGKVSSIVHISNLVRPFTLGQLKELLSRTGTLVEEGFWIDKIKSHCFVTYCSSEEAVAT
RASLHGVKWPQSNPKVLSVDFCQKDELDFHKGTADRPAAEEQGLGTNRGRTAGLPPLLPE
RDQWAEREREMERREKARAEREWDRDKVREFGKPGEEKEGGPRRSRSRERRRKERGKSKE
KKTEKKEKMAEDPPAKLLDDLFRKTKAAPCIYWLPLTDEQFVQRESARADRMKEREKRRK
EQDEEEEKKREEERKERMKAGGVPAGERSEGEKEKEKEKEKDRERDRDRGRDREKERERE
TDKRRDDYRRPEGRGAGGGRRSRSRSDPRERRR
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagtcccttcgggtggcg
gatttaaaagctgctcttgaggagagggggctctcgaaaagcgggcagaagaatgctctc
gtcaaacgactcaagggggctctcatgcttgagaatcttcagaggacctccaccgctcac
atcggactgcagccaaattcgcatatcggtgaggaaatgagccagaacagcttcatcaag
cagtatctggctaaacaacaggagctcctgaggcagcggctggagagagaggcccgcgaa
gcatatgacacaaatgagcaagaggaccacacagaagttaacaacagtacatcatgccct
cctcaagcccaggatgccgcaccggcattggttgagcaaaacaagccgcctggcccctca
ggtgtcgacggattgtttggtgcagtgaatgaggacgagggcaacagggaccaggaggct
gacctgccctgtcctcctgcttctggctcaatggccatgcgtgttcctggcggtgaggac
cggccagagaagggctctgcctcaaacgaagccgctgcagacagcgacgacgacgacagt
gatgacggcgatgaggatggagacgacgatgactgggaaagtggtgctcggaggagaggc
cacagagagccggccacagcgcccacgaccagagagaggtctggggcatcctgtcaaccc
cctcagcaacacatgccttcccttttgtcccctcagctccgccagccaactcctcctccc
tccccacctccagagttgtcattccccctgcctgacaccccaaaacagagcccccctagt
ccagatgtagccccagctaggcgctcatcgagtacctccagctccgggtcttctagcagc
ggcagccgcagtagcagcccagagccacagaggagtggtcatgccgagcgcaagccgggc
ccgctgacacttctggcacgtaaaatggagtcagaaggtgctttctctggagcaggttgg
caccgcgccggtggggaaggtgagaggcaagacggcagttctctggctacatcatttctt
tgcagagggcttccagagggtctggtatctgccatcactcacacagccaatactgcaggt
cacgtgtcatttcccacaattccaggcattaaccagggtctttcaggagcacattcggcc
catattcagctacccgttagtgtgctcaaggccactgcaacagaggagagggacactgag
attgaacgagaaagggcccttgagctggaaaggcaagagaagcagcgtaaacttgagcaa
gaacgagcgatggaggaagagcgggaaagagctcttgcgatggagagagagcaaagagag
agagctctggagaaagagagaattgaacgacagcaggccatagaaagagaagaacaagaa
aaggctttgcagcgggagagagaacttgcccttgaacgagagaggcaggagagggaacga
gctttggctaaagagagggaagagcgggagcgagctttggcacaagagagggccctggag
atggagaggcagaaggagctcgagagacagagggccctggagagagagaggcgagagaga
gaagaaatggagagaataaaagagctagagagagaagaaatggagagaataaaagagcta
gagagatccaaggccttggagcaagaaaagaaggagagagagagggctcttgagcaagag
aggcttcagagggagagagttctggaggctgagagaaaggagaaggagaggattgagaga
gagaaggctctggagcaggaacggttggaaagggaaaggttagagagacagagagccttg
gagcaagagagactggagagagagagagcctttgaacaagagagactagaaatggagaga
gtcctggagcaagagcgtctcgagagagcgaaagccctggagcagcagcgcttagagagg
gagaaagtcctggcaaaagagcgactagagcgagagaaagccttggagcaagagagaata
gacagagaaagagctctggagcaagaaaggttgaagcaggagagagccctagaacagcag
aggttagagcttgagaggaaggaaaatgagagaattgagagagagaaagcattggcgcaa
gaaaggatcgagaaggaaaaagccttggatcgagaacgggaggaaaaagagagattcaag
agagaggcagccctggaagagcagaggaaagagaaggagaggctggagagggagagcgct
ctacagcaggagaagcttgagcgggagagagccttggagaaggagagaaaggagaaagag
agggctcttgaacacgagaggctagagaaggagaaggccgtgcagaaagaaagggaggag
caggaaagggccctggaacaggagaaagagagagcgaggatggctgaaagggagagggaa
agccacctccctccatccaagcgcggccgtgagatcggtctcagcgccctgcccactcct
cctgccttctccgtcggaccaggtagaaagtcatcaactgaggcaggagagcaggatgag
gaccatgcttcaaagtcccggggagaagcagcagaatccagtgcactcatgtcaccaacg
cctccgttgcctcaatcctcattcaagaagttccggttcttaagggacaccccgattcag
ctccaatcttcctcccctcccatggtcatcaagcgacctcgcaacttttccgataccccc
cagcctcgggtcttgcctgtgtcctccctcaccgatgtcggggaacggcgagaggtagaa
ctccagtcctccactgaacaagaagacccacagaaggggacaaaacaggaggctgttgcc
agggcgccgggggctgtggaggccgcgcccgcgaaggagcccgctgttggtaccacactg
gtccagagtcccaaaaaagaaaaggccacaagcctagtgtcggaggacaaacaaaaggaa
tccaccaaaaaagtagaggaaagcagtcctgcaaaccaactggctactgcacagcgtagg
ggaagagatgcaaagaaggaagagaaacacgcaagacgaaggtcatcgtctaatgactcc
tcttcctcagaatcagactctgggtcctcatcatctgggtcgtctagctcatcctcatcc
tctcaagagaaaacctgccccactacaagaggtagaagggaaaagaaacctgacaaagac
acctcaccacagcacagggtgacactagagacaaaggctgggggcttaaaggaaactcca
aaagcctccccttacaaaagagacatgtctgtagagaagagtaacacggctgctgttgga
gacactcacaccatgaaaacattaaaggaagccccgagcagagaggattcacaggggaag
agaaaggacaacgagggagaggcggaaacggacaaaaaaaggcaggtgaaggagactgcc
atggcagagccggagaagcttccagagaccagcgaggagacaccaaaggccttctcagct
cgtaagatctccatcagcagcagtaaattatcccctggcagtgcagagggcgagcaggac
tgtggggccgcggccggtcgcaagaggaggtggggctccagcacagccgtcactgccaag
aagccttccatcagcattaccaccgattcactcaagtctctgataccagacattggcccg
tgtctcgggcaggaggcagcagtggacctgcacccagaggaagctgtcctctctggagct
gaggatgaagagagggagcgctccgaccaagaccttcagatccgtcgcactgtcacacag
gtggtgcacctggagagccaggagaatggacaggaagagtcaaagaggagcagacacgag
gagtctgagtctgatgacccacagggagatggagagaggacacaggtgcatgaagagaag
atggaaaccccatttcctggagccatggaaacccagtctccatcacacatcagccatgat
gtagaagtcaacactgtgaccgccagcgacaccctcattcgtcgctccatcagccagcag
aaaacgggtgtttccatcacaatcgatgatcccgttcgcgcgacccggcagccctcgcca
cctcgaggcaaagtctccagcattgttcacatcagcaacctggtgaggccgttcactctg
gggcagctgaaggagctgctcagcagaactggcaccctggtggaggagggcttctggatc
gacaaaatcaagtctcactgctttgtcacctactgtagctctgaagaggccgttgccaca
cgggcatctcttcacggagtaaaatggcctcagagcaacccaaaggtcctcagcgtagac
ttctgccagaaggatgagctggacttccacaagggcacagcagacagacccgcagccgag
gaacaggggctcggtaccaaccgtggccgaaccgcgggcctgccccctctccttcctgag
cgagaccagtgggccgagcgcgagcgtgagatggagcgccgggagaaggctcgagcagag
cgggagtgggatcgcgacaaggtcagagagttcgggaaaccgggtgaagagaaggagggc
ggtccccggaggtcacgctccagagagagacgccgcaaggagaggggaaagagcaaggag
aagaagactgagaagaaagagaaaatggctgaggatccccctgcaaagctgcttgatgat
ttgttccgcaaaactaaagcggccccttgcatatactggcttccacttacggatgaacag
tttgttcaacgggaatctgccagagcagaccggatgaaggaacgtgagaaacggaggaag
gagcaagacgaggaggaggaaaagaaaagggaagaggagcgcaaggagaggatgaaagct
ggaggtgttccagctggagagcgcagtgagggtgagaaggagaaggagaaggaaaaagaa
aaagacagggagagggacagagaccgagggagggacagggagaaggagagggagagggag
actgacaaacgcagggatgactaccgtagaccagagggccgcggggcaggcgggggccga
cgctcacgcagccgcagcgacccacgagaaaggcgacgttaa
DBGET
integrated database retrieval system
