Cyclopterus lumpus (lumpfish): 117746916
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Entry
117746916 CDS
T09199
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
clum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117746916
03015 mRNA surveillance pathway
117746916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117746916
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117746916
5.6.2.5 RNA 5'-3' helicase
117746916
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117746916
mRNA cycle factors
Common to processing body (P body) and stress granule
117746916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
117746916
NCBI-ProteinID:
XP_034412146
Ensembl:
ENSCLMG00005009276
UniProt:
A0A8C2XKF5
LinkDB
All DBs
Position
17:complement(11053357..11070802)
Genome browser
AA seq
1110 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTRTQSQLDRQVNGPD
ILQNGDDSVIKASQLLAELNFEEDEEDAYYTKDLPLHACSYCGIHDPACVVYCNTSKKWF
CNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFPLGFIPAKADSV
VVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINK
LEELWKVNPTATLEDLEKPGVDEEPNHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQ
TQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVIKVP
DNYGDEIAIELRSSAGAPVEIPHHFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHK
LLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT
IVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQ
TRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDPR
LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSL
FERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDK
PMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRSYLV
QYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALT
RARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTIN
PGGRFMSTAMYDAREALIPGSVYDRNSNGRSSNMYFQTHDQIGMIGTGPGPMTSLNIPIP
FNLVMPPIPPPGYMGQVNGPSAGRGGGMKGKAGSGGGGGARGGRQRNRGNMGNHSGGNGG
ADRRGGHMSGSQTSQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEF
KSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagactctcacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagacccggacccagagtcagctagaccgccaggtgaatggccctgac
atactccagaatggggacgactctgtcataaaagccagtcagctgctcgcagagttgaac
tttgaggaggatgaggaggacgcctactacaccaaggacctgcctctacatgcctgcagt
tactgtggtattcatgatccagcctgtgtggtctactgcaacaccagcaagaaatggttt
tgtaatggccgtggaaacacatccggcagccacattgtaaaccacctggtgagagcaaag
tccaaggaggtgaccttgcataaagatggccctctgggggaaacagtgctggagtgctac
aactgtggctgtcgcaatgtcttccctctgggtttcatccctgccaaagccgactcggta
gtggtgctattgtgcaggcagccatgtgccagccagagcagcctgaaggacatcaactgg
gacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctggctggtgaaa
atcccttcagagcaggagcagctcagggctcgtcagatcaccgcccagcagatcaacaag
ctggaagaactctggaaggtaaatcccactgcaaccttggaggacctggagaagcctggt
gtggatgaggagcccaaccatgtgctgctccgctatgaggatgcctaccagtaccagaac
atctttggtcctcttgtgaagctggaggctgactacgataaaaaacttaaagagtctcag
actcaagacaacatcactgttcgatgggacttgggcctgaataaaaagaggattgcttat
ttcactcttcccaagacggactcggacatgcgactgatgcagggagatgaaatttgcctg
aggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatcaaagtccct
gataattatggtgatgagattgccatagagctaaggagcagtgccggggctccagtggag
atcccacaccattttcaggtcgactttgtatggaagtccacttcctttgacaggatgcag
agtgccctgaagacgtttgcggtggatgaaacttcagtgtctggttacatctaccacaag
ctgctgggacatgaggtagaggatgtggtcataaagtgtcagctgcccaaacgcttcact
gctcaaggcctgcccgaccttaaccactcacaggtgtacgctgtgaagacagtgctgcag
cgtcctctcagtctgatccaggggcctcctggcacagggaagacggtaacctcagcgacc
atcgtctaccacctggccagacagggcaacgggccagtgctggtgtgtgctcccagtaac
attgccgtcgaccagctgacagagaagatccatcagacaggcctcaaggttgtgaggctg
tgtgccaagagcagggaggctatcgactcgccggtgtccttcctggcactgcacaaccag
acccgtaacatggacagtatgccagaactacagaagctccaacagctgaaggacgagact
ggagagctgtcctcctcagacgagaagcgctacagagctctgagacgcactgctgagagg
gagctgcttatgaatgccgatgtgatctgctgtacctgtgtcggggcaggggatcctcgt
ctggctaagatgcagttccgctcaatcctgattgatgagagcacccaggccactgaaccc
gagtgcatggtgcccgtcgtcctgggggctaaacagttgattctggtgggtgatcactgc
cagctgggccctgtggtgatgtgtaagaaggcagccaaagcaggtctgtcccagtcgctg
tttgagcgtctagtagttttggggatccggccaatccgtctgcaggtccagtaccgcatg
catccggccctcagtgccttcccctccaacattttctatgagggctctctgcagaatggg
gtcactgccgcggaccgtgtgaagaaaggatttgacttccagtggccgcagcctgacaag
cctatgttcttttatgtcacccaaggccaagaggaaatagccagctctggaacatcctat
ctcaacaggactgaggcagccaatgtggagaaaataaccacaaggttgctgaaagctgga
gccaaacccaatcagattggcattattacaccctatgagggacagaggtcctacctggtc
cagtacatgcagttcagtggctccctccacaccaaactctaccaggaggtggaaatagcc
agcgtggatgcctttcaaggcagagagaaggacttcatcatcctgtcctgtgtgagggcg
aatgagcaccagggcatcggcttcctcaatgatcccagacgtctcaacgtggcactcacc
agggccaggtatggtgtgattattgtgggaaaccccaaggccctgtccaagcagcctctt
tggaaccacctgttgaactactacaaggagcagaaggtcctggttgaagggccccttaac
aatctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaacaccatcaac
cctgggggtcgatttatgagcacagccatgtatgatgctagggaagccctcattcctgga
tctgtttatgaccggaacagtaacggacggtcgtccaatatgtatttccagacccacgac
cagattggtatgatcggcacaggtcccggtcctatgacttccctgaacatccccatcccc
ttcaaccttgtgatgccccccatacctccacctgggtacatggggcaggtcaatggaccc
tctgcaggtcgtggtggaggaatgaaaggcaaggcaggcagtggaggaggaggcggggct
cgaggtgggcgtcaaagaaaccgtggcaacatgggaaaccacagtggaggaaatggagga
gcagaccggcgtggaggccacatgagtggcagccagaccagccaggatttgggctcccag
cccttctcccaggggcctctgactcagggctacatcaacatgagccagccctctcagatg
agccagcctggactctcccagcctgaactctcacaggacagttacctaggagacgagttc
aagtcccagattgatgtggctttgtcgcaggactccacctaccagggggagcgggcctac
caacacggtgtgactgggctgtcccagtactag
DBGET
integrated database retrieval system
