Cyclopterus lumpus (lumpfish): 117746927
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Entry
117746927 CDS
T09199
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117746927 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117746927 (ndc1)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117746927 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
117746927
NCBI-ProteinID:
XP_034412159
Ensembl:
ENSCLMG00005022895
UniProt:
A0A8C3B5G8
LinkDB
All DBs
Position
17:13400923..13409086
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AA seq
672 aa
AA seq
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MFSTEQSCWFIRKVVCWRAVASIAWAVLLLLPITAVFVILSRFSLLHPIQTFSECLSFLT
CASAIFSLILMCGVIIMVGFLNLEYYTVIPTIACSKIALLGQLLHPRQFVNSLAHCIMGI
IVAWCCAVTLGGRYETIGYPCTQGDGTDSSPQMCLNEYHLILLLAGAFVGFSHSLLAVIS
NINYVSFHTVQQYKYLRFKGSLPFVVKCSAAQALYSVRNYIVVYFFLGYIPKAWICKTLN
LHLNSSVHPLDSIAGLLDLSLLYHQWISASFLLFTWNITLLLFRIFVTEVYSFPVQSSFT
EDAHQCLPKVLTDKQPMILKFLALQDVALLSQHSPSRRCEVFSLSQPGGHPHNWNAISKE
CLSLLADLTQRLVAYHDTVATNGRAKSLSTGSERKTSSETSFTSATEDLMSPRPTLLLRT
PASVFARFVVGTPHSPLTAPFTPDLDSPFASPALRRLTAPLDQCSPWFGTVQSPHIMRRA
PKLWSTSTDSQVNGSPPASPASVPSPKQEPFKPSRLALFLRNRKEQVKHFLAKRVLIMYL
FNKLPEASSQALFADSQAHIWALEGLSYLVQASFSEDQFGVIQTTLPSILGCMLILQEAV
DRHFKLPHASSKPVRSASGMGDSTYKTLRFALRATLKTAIYRITTTFGNHLNAVQMSAEH
RKRLQQFLEYKE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgttttctaccgagcaaagttgttggtttatccgcaaggttgtttgctggagagcggtg
gccagtattgcttgggctgttctgttgttgctacccatcacagcagtttttgtgatcctc
agcaggttcagtctgctccaccccatccagacgttttcagaatgcctatccttcttaaca
tgtgcaagtgccatcttctcattaatcctgatgtgtggagtgatcatcatggtggggttc
ctgaacctggagtattatacagtcatcccaactattgcatgctcaaaaattgccctgttg
ggtcagctgctccaccctcgtcagtttgtcaactccctggcccactgtatcatgggaata
atcgtggcttggtgttgtgctgtcacgctcgggggcagatatgagacaatcggctaccct
tgcacacagggtgatggcactgacagttcccctcagatgtgtctgaatgaatatcacctc
atccttctgttggctggagcctttgttggattctctcacagtctgcttgctgtgatctcc
aacattaactatgtctcttttcacactgttcagcaatacaaataccttcgctttaaagga
tccctaccttttgtggtgaagtgcagcgccgctcaagcactttactctgtgaggaactat
attgttgtgtatttctttttgggatatattccaaaagcatggatttgtaaaacactgaat
cttcatttgaacagctctgttcaccctctggacagcatagctggactgctggatctctcc
ctgctctaccaccagtggatcagtgccagtttccttctcttcacatggaacatcacactg
ctgctttttaggatatttgtcactgaggtgtacagttttcctgtgcagtcatcttttact
gaggatgcccatcagtgtcttcctaaagttcttacagacaagcaaccaatgatattgaag
ttcctcgctctgcaggacgtggctctgctgtctcaacactctccatcaagacgctgtgag
gtcttcagtctgagtcagccaggtggccatcctcacaactggaacgccatcagtaaggag
tgtctgtctctgctggctgatctgacccagagactcgtagcataccatgacactgtagca
accaatggcagggccaaatccctgtctaccgggagtgaaaggaagacttcctctgagaca
tcatttacctcagccacagaagatctgatgagcccgaggcccactttactgttgagaact
ccagcttctgtctttgcccgcttcgttgttggcaccccacacagccctctgacggcacca
ttcactcctgacctggacagcccttttgcttctcctgccctgcgccgtctcactgctcct
ttagaccaatgctcgccgtggtttggcacagtgcaaagcccacacatcatgaggagggcc
ccaaagctttggtccacctccacagattcacaggtcaatggcagtcccccggcatcccct
gcctcagttcccagtcccaagcaggagccgttcaaaccaagtcgcctggctctgtttctt
cggaacagaaaagaacaggttaaacatttcttggcaaaacgtgtgctgataatgtatttg
tttaacaagcttccagaagcctccagtcaagctctgtttgcagacagtcaggctcacatc
tgggctttagaagggctgtcttaccttgtgcaagcctccttctcagaagaccagtttggt
gttatacagactacattacccagtattctcggttgcatgctgatcttacaagaggcagta
gatcgacacttcaagctgcctcatgcctccagtaaacctgtccggtcggccagcggcatg
ggagactctacttacaaaacactgcgctttgctctcagggccactctcaagactgccatc
tacaggataacaaccacttttggaaatcacttaaatgctgttcagatgtctgcagagcac
cggaaacgattgcagcagtttctggagtacaaggaataa
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