Cyclopterus lumpus (lumpfish): 117747016
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Entry
117747016 CDS
T09199
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117747016 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
117747016 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117747016 (thoc1)
03041 Spliceosome [BR:
clum03041
]
117747016 (thoc1)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117747016 (thoc1)
Spliceosome [BR:
clum03041
]
Complex C
Other components
EJC/TREX
117747016 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117747016 (thoc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
117747016
NCBI-ProteinID:
XP_034412290
Ensembl:
ENSCLMG00005001824
LinkDB
All DBs
Position
17
Genome browser
AA seq
667 aa
AA seq
DB search
MTCYVSSGCEGVKMSPSLFNFVDARDKFTASARHSLVGKSSKPLVSVFNQFPGNEVEKKT
TLDQALRGVLGDQIVERKATCDEYLSLIYLSIDAVTEGICSPTTPFLLLGDVLDCLPLDQ
CDKIFSFVEENVSTWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFP
LSEKSGLNLQSQFNLENVTVFNKNEQESTFGQKHTEEKEDGMEVEEGEMGEEDAPAPCSI
PIDYNLYRKFWTLQDYFRNPVQCYDKFSWMTFLKFSEETLAVFKSYKLDDMQVSKRKLEE
LRASGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSGCVLND
DQTTWIEETTKLVFQLLKEIPPDGDKFATMVEHILNTEENWNDWKNEGCSSFVKERTVDD
KPKRPTRKRQAPEDFLGKGPDSKIFMGNDELTRLWNLNHDNMEACKSDSREFMPSLDEFF
AEAIEQADPTNMVEEEYKAVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVS
KLAKELPKDIPSEEIKTGEEDDDDNGDNLLKDSNDSPGIQSKTVSNQQMDDIAAKLGAQW
KTLASHLEMKAAELREIETDSEDIDMQAKLLLVAWQDREGSQATVESLVAALGAAGFSEI
ADNLSDA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgttacgtcagttccggttgcgaaggtgtaaagatgtcgccgtcgttatttaat
tttgtcgacgctagagacaaatttacggcgtctgccagacactcgctggtcggtaaaagc
agcaagccgctggtgagcgtgttcaaccagttccctgggaacgaggtggagaagaagacc
accctggaccaggcgctgaggggtgttctcggggaccagattgtggagcggaaggcgacc
tgtgatgagtacctgtctctcatctacctgagtattgatgccgtgacagaaggcatctgt
tctcctacaactcctttcctcctgctgggagacgtcctggactgtcttcccctcgaccaa
tgcgacaaaatattctcctttgtcgaggagaatgtttctacctggaaatcgaactctttc
tacactgccgggaagaactacctgttgaggatgtgcaatgatcttctgaggaggctgtcc
aaatcccagaatacggtgttctgtgggcgaatccagctcttcctggcacgcctcttccct
ctgtcggaaaaatcagggctcaatctgcagagccaatttaatctggaaaatgtaaccgtg
ttcaacaagaatgaacaagaaagcactttcggccagaagcacacagaagaaaaggaagat
ggcatggaggtggaggaaggggagatgggagaggaggatgctcctgcaccgtgttccatt
ccgatcgactacaacttgtacagaaagttctggactctgcaggactacttcaggaacccc
gtgcagtgttacgataaattctcctggatgacatttcttaagttctccgaggagacattg
gccgtgttcaagagctataaattggacgacatgcaggtctctaagaggaagctggaggag
ctgagagcgtcgggaggagagcacgtctactttgccaagtttctgaccagcgaaaagctg
atggacctgcagctcagcgacagcaacttccggcgtcacattcttctgcagtacctcatc
ctcttccagtacctgaagggtcaggtcaagttcaagagctccggctgcgttctgaacgac
gaccagacgacgtggatcgaagagacgaccaaactggtttttcagctgctgaaggagatc
cctcctgatggagacaagtttgccaccatggttgaacacatcctcaacacggaggagaac
tggaacgactggaagaacgagggatgctcgagcttcgtgaaagaacggacggtagatgac
aaacccaagagacccaccaggaagagacaagccccagaagacttccttggaaaagggccg
gacagcaagatcttcatgggaaacgacgagttgactcgactgtggaacctgaaccacgac
aacatggaggcctgcaagtccgacagcagggagttcatgccgtcgctggacgagttcttc
gcggaggccatcgaacaggccgaccccacgaacatggtggaggaagagtacaaggccgtg
aggaacccgaactacggctggcgcgccctgaggctgctgtccaggaggagtccgcacttc
ttccaaccgaccaaccagaagttcaagagcctggcggactacctcgacagcatggtcagc
aaactggccaaagaactgccgaaggatattccctctgaggagatcaagacgggcgaagag
gacgacgacgataacggagacaatcttctcaaagacagcaacgacagtcccggcattcag
agcaagacggtgagcaaccagcagatggacgacatcgcggcgaagctgggcgctcagtgg
aagacgctcgcgtctcatttggagatgaaggcggcggagctgcgagagatcgaaacggac
agcgaggacatcgacatgcaggccaagctgctgctcgtcgcctggcaggaccgagagggg
tcgcaggctaccgtggagagcctggtcgcggcgctcggcgcggccgggttctccgagatc
gccgacaacctcagcgacgcctaa
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integrated database retrieval system
