Cyclopterus lumpus (lumpfish): 117747440
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Entry
117747440 CDS
T09199
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117747440 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
clum04091
]
117747440 (frem1a)
Lectins [BR:
clum04091
]
C-Type lectins
Lecticans
117747440 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
117747440
NCBI-ProteinID:
XP_034412540
Ensembl:
ENSCLMG00005004935
LinkDB
All DBs
Position
18:15588785..15618672
Genome browser
AA seq
2172 aa
AA seq
DB search
MGSPGQTLAWTVLPVLLLGMTCPSHGSLVKVNKGVKVKRGQSAYLQDGDLQFHIPRQKDA
CKVEVVLNEPITQRVGKVMPQVFDCHYLADEVKYVHSGCPLLKEDTVKLRLYRFTETETH
MEVFSLHVDIMEPECSIIKLGPKSLEVPEFYSFSDAVDGNVVSFHYEQRSSLECSIHLSS
HDTHLPAHGQLVTGEPEKVTIRGDEPESFIPLRQQLDNKARAMCKSEDCLKGLKLVKFTK
IPCDDFLLMGLRYQHIDPPSPDVDYIAIRLDLKDTRSGSTYQSEQAWIPVHIVGALSNQP
PTPSFMSMFILEVDQFILTPLSTATLDTEDEETPKQLLVFNITKPPVDGFITHLSDHTRP
ISSFTWLDLNDMLIGYQPPNSSNTHRRNYEIEFEVHDFFFEKSPSMTVHMSVRNAETNAP
RVSWNMGLSLLEGQSRPIMWEQLQIVDNDNLNAVRIITVDGLQHGRLTVRGGKGFMFTVK
DIKAGVVRYHHDDSDSTKDFIIFRITDGHHQTRHKFPIKILPKDDSAPVLITNMLLEVSE
GQMALLRGSTLQASDMDSSDDYILFNITRPPQAGEVMKMPTSGLTGYPVSHFLQRDLSQS
MVYYRHLGNEVFDDFFEVVLSDFHDPPNLSEPQVVVVHIEPVPDQPPKEVPGSSRCLVIK
ETEVVHITRQQLHFVDQESPDSELTYTVTTPPFHAGPHSSPDAGRLFLVDSIPKFTKDSN
APVLRLFTQHAVNFLKVAYMPPVMDIGPHPQYIQFVLSVTNLLGKTVTGICFNITLVPVD
NQSPQVITNSLTVDEGGQCWLGPEHLVLSDVDSVEEALQVALQREPQHGALHLSGLPLKP
DQAFTVRDLKSLKVRYNHDSSETVEDHIDFTATDGFNSVRFVLHVKVLPVNDEVPVLVAG
LKPVLSCAEGQEVIITAEYIYATDADSDNSSLTFLIARQPYHGVVLRNSIVVDRFIQADI
TARIISYKHTGLEIGLTPRHDTVTFVISDGETENSASCCAEEHLTKTRDVTQLRRSLPVY
DLQVTVFPVDSQPPSLTAGDIFTVDEGGSAPITASHLKASDVDTALDKLVVSLISSPRFG
YIENVLPSPGFEKSNTGISIASFSYKDIIEGHVNYVQSRHQRMEPTADQFMFCVSDGKHS
SAHVPFYIIINPTNDETPQFVARNITVREGEMKQLDSSVLHAGDLDVPEDSLLFSVVRAP
QHGRIVSHGSETSAGPQSPVVDFTMTDLSNGMDLMYMHDDSENTEDSFTIQLSDGRHQLQ
RQVMVKVLPVNDEKPHIIRNNGLLVELGEARLISSVALFAQDGDTPSSEVMYTLDSVPTQ
GLLQLKEGQDWRTLTAGTNCTQEMVDMNLLRYVNTGAKSQDFFVFYLSDGKNQSPPQHFH
ISVKDLEKGNIAMFVKPANVSRGDRVVLTTDVLLATDGTEKPEELLYIITNPPAHGHVEY
IKHPGLTISTFSQMDIAANLVAYVHDNRATTPTETFQFVVSNGKTSRNGSFVIAVEMVDR
ILPSLSSNKGLSVPQGSSVILGPDCLVLSDPDTPPSALTFVLLQPPQYGGLLLGGATLTA
GSNFTQRDIQELEVTYRHAGGPAQIDRFAFGASDSTKRGFLLDGQLHTEPVFFTIQIKPL
DKSCPEVVKLLPLWKAEPLGDGRHGISVSSRELKAQDRDSREEELMFCIVRQPYFGYLEN
MTTGGFVPQRFSQMELNKRTIAYIINPDGESLSDSLEFTVSDPLGNTGPPHILEFSWSSV
ELSQPEYTVCEEQGVVSLDLIRKGNLAESSYITVKVKEVTATAGKDFRTSSSSLIQFDPG
VSKRSWQSEIIQDHLEETVEMFEVLLVSPEGAVIGSISKAQVTIRDSGSGQPRLHQDHEA
PLLVGKEVRSDTYPRHGSIQLEKLPLGTESVVWARGDSISRPGAHVPKKKLQVMGNPKSI
APSSVFHNGTDIVYTYHGIMQMQVEDNTSPSRTGRKANIRVVSRGAQPQELTEPESEPHR
QISKPQNTALAKGHAKADNTIAKPCVPELMGLLHFNQTSNQLFHCNGVSWKPWAPTDQMV
SAQMCGQGWTFHGGYCYSLSSEPKVTWSAANRACRERYKGSLASVLSKVDMDWLWDFSGR
KPFWIGLSDRDGRGRWEWAAGEPVSYTNWKKTPPRSKRKRNKKCVLVWRRAKWQIRDCKT
SRGHRFVCSRTT
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaccgggtcaaacactggcctggaccgtgcttcctgtgcttctgctgggaatg
acctgcccatcacacggttcccttgtgaaagtcaataagggtgtaaaggtgaaacggggt
cagtcagcctacctccaggacggggacctgcagttccatattccccgtcagaaggatgcg
tgcaaggtggaggtggtgttaaatgagcccattactcaacgagtaggaaaagtcatgcct
caggtatttgactgccactatctggctgatgaggtgaagtacgtccatagcggatgtccc
ttgttaaaggaggacacagtcaagcttcgactctacaggttcacagagacagagacacac
atggaggtgttttctctccatgtggacattatggaacctgaatgcagcatcataaagctg
ggacccaaatccctggaggttcctgaattctacagcttctctgatgccgtggatggcaat
gtggtgtccttccattatgagcagcggtccagtctggagtgtagcattcatttgagtagc
catgacacccacctgccagcccacggccaactggtcaccggagaaccagagaaagttacg
ataagaggggacgagccagagagcttcatccccctacgccagcagctagataataaagcc
agagcaatgtgtaaatctgaagactgcctgaagggtctgaagctagtgaagttcaccaaa
attccctgtgatgacttccttttgatggggctgaggtatcagcacatagaccctccatcg
ccagacgtagactacatcgcgatcagactggatctcaaggacacccggagtggcagcaca
tatcagtctgaacaggcctggatccccgtgcatatagtcggggcattgtccaaccagccg
cccacaccgtccttcatgtccatgtttatccttgaagtggaccagttcatcctcactcca
ctctccactgccacactagacactgaagacgaagaaactcccaaacaacttttggtgttc
aacatcaccaaaccgcccgtggacggcttcatcacccatctgtccgatcatactcgccca
atctcctccttcacatggctggatctcaatgacatgctcattgggtatcaacctccaaac
tcctcaaacacccaccgcaggaattacgagatcgaatttgaggttcatgattttttcttt
gagaagagcccatcaatgactgttcacatgtctgtaaggaatgcagagacgaatgcaccc
agagtgtcttggaacatgggccttagtctgttggagggtcagtctcggccaataatgtgg
gagcagctccagattgtggacaacgacaacctgaatgcggttcgtatcatcactgtggac
ggcctgcagcatggacggctcactgtcagagggggaaagggattcatgttcactgtcaag
gacattaaagcgggcgtggttcgctatcaccacgacgacagcgactccaccaaagacttc
atcatcttccgtatcaccgacggccaccatcagacccgacacaagttccccatcaagatc
ctgccgaaggacgacagcgctccggtcctcatcaccaacatgttgctggaggtgtcggag
ggccagatggctttactgagaggctccaccctccaggcttcagacatggactccagcgac
gactacatcctctttaacatcacccgccccccacaggcaggggaggttatgaaaatgcca
acatcagggctcacaggttatcctgtcagccacttcctgcagagggacctgtctcagtcc
atggtttactatcggcacctaggaaacgaggtgtttgatgacttctttgaggtggtgctg
tcagatttccatgacccccccaacctgtcagagcctcaagtggtggtggtgcacatagag
cctgttccagaccaaccacctaaagaggttcctggttccagtcggtgtctcgtgatcaaa
gaaacagaagtggtccatataacccggcaacagcttcactttgtagaccaggagtctcca
gacagtgagcttacatacacggttacgactccacctttccacgctggtcctcacagcagt
ccagatgctgggaggttgttcttagtcgacagcatacccaagttcaccaaagactccaat
gcaccggtgctgaggctcttcacacagcatgcagtgaacttcctgaaagtagcctacatg
cctccagtcatggacatcggccctcacccccagtacatccagtttgttctctctgtcacc
aacctcctgggcaaaacagtcactgggatctgcttcaacatcactctagtgccagtggac
aaccagtcgccacaggtcattaccaactctctgactgtagatgaaggggggcagtgctgg
ctcggccctgaacacttggtgctgtcagacgtggactctgtggaagaagccctgcaggtg
gcgctccagagggaaccgcagcatggggctctgcatctcagcggcctcccgctgaaacca
gaccaggctttcactgtgcgagacctaaaaagccttaaagttaggtacaatcacgacagc
tcagaaactgtagaggaccacattgatttcacagcgacagacggcttcaattcagtccgc
ttcgtcctgcacgtgaaggtgttgcctgtcaatgacgaggtcccagtgttggtggctggt
ttgaaaccggttctcagctgtgcagagggacaggaagtcatcatcacagctgagtacatc
tacgctacggacgcagacagcgacaacagcagcctgaccttcctgatcgcccggcagcct
tatcatggcgtggtcctccggaactccatcgtggtcgatcgcttcatccaggcagacatc
actgcgaggatcatctcctacaaacacacaggactggagattggactcactcctcgccat
gacaccgtcacctttgttatatctgacggagaaacagaaaactctgcttcctgctgcgct
gaagaacacctcactaagaccagagacgtgactcaactacgacgcagcctgcctgtgtat
gacctccaggtcacagtgtttcctgtcgacagccagcccccttctctaaccgcaggcgac
atcttcacagtggatgaaggtggctctgcccccataactgcatctcatctgaaggcctct
gacgtggacactgctctggacaaactggtggtcagtctcatttcatcgccccgcttcggc
tacatagaaaatgttctgcccagtcctggctttgaaaaaagcaacacgggcataagcata
gcttccttttcatacaaagacatcattgagggtcacgtgaactacgtacagtccagacac
cagaggatggagcccacagctgaccagttcatgttctgtgtatcagacggcaaacacagc
tctgcccatgtgcccttctacatcatcattaacccgaccaacgacgagaccccacagttt
gtggctcggaacatcacagtacgagagggagaaatgaagcagctggactcatccgttcta
catgcgggggatctggacgtccccgaggacagcctgctcttcagtgtggtcagagccccg
cagcacggccgcatcgtctcccacggcagtgaaacgtcagccggtcctcagagccctgtg
gtggacttcaccatgacagatctgtcaaatggtatggatctgatgtacatgcacgatgac
tcagagaatacagaggacagtttcaccattcagttgagtgatggccggcaccaactccaa
agacaagtgatggttaaagtgctgccagtcaacgacgagaagccgcacatcatcaggaac
aatggactgctggtggaattgggagaagccaggcttatttccagcgttgcactgtttgca
caggacggtgacactccttcttcagaggtcatgtacacgcttgacagtgttcccacccaa
ggcctacttcagcttaaggaaggtcaggactggaggacattgacagcggggacaaactgc
acccaggagatggtggacatgaaccttctgcgctatgtgaacacaggtgctaaatcacag
gacttctttgtcttctacttgtcggatggaaagaatcaatcgcccccccagcacttccac
atctctgtcaaagatctggaaaaaggaaacatcgccatgtttgtgaagccggccaatgtt
agccgtggagaccgcgtggttctcaccacggacgtgctgttggccacagatggcacagaa
aagccagaggagcttctgtacatcatcaccaaccctccggctcacggacacgtagagtac
atcaagcatcctgggctgaccatctccaccttcagccagatggacatagcagccaacctc
gtggcttacgtgcacgacaaccgagccaccacacccacggaaacctttcagtttgttgtg
agtaacggtaaaaccagccgaaacggaagctttgtgatcgcagtggaaatggtggaccgc
atcctgccgtctctgtcctccaacaaagggctctcagttccacaaggctcctccgtgatc
cttggtcctgactgcctggtcctgtctgaccccgacactccacccagtgccctgaccttt
gtccttctccagcctccacagtatggcggactgcttttaggaggagccacactaactgct
ggctccaacttcacccagagagacatacaggagctggaggtaacctacagacatgccggg
gggccggcgcagatcgaccgctttgcctttggtgcctctgacagcaccaaacggggtttc
ctgctggacgggcagctacacacagaacctgtcttcttcactattcagatcaagcctctg
gataagtcttgtcctgaggtggtcaagctgcttcctctctggaaagcagagcctctcggc
gacggacgacacgggatctctgtgtcctctcgagagctgaaggcccaagacagagacagc
agagaagaggagctgatgttctgcattgttcgacagccctactttggttacctagaaaac
atgaccacaggtggttttgtaccacagcgcttctctcagatggagctgaacaagagaacc
atcgcctacatcatcaacccagacggagagtctctctcagacagcctggagttcacagtg
tctgatcccttagggaacacagggccccctcacatactggagttcagctggtccagcgtg
gagctgtctcagcccgagtacactgtgtgtgaggaacagggagtggtctcgctggacctc
atccggaaaggaaacctggccgagtcgtcatatatcactgtcaaggtgaaggaggtgact
gcaacagctggaaaagacttccgcacaagctcttcttccctcattcagtttgacccagga
gtgtccaagaggagctggcaaagcgagatcattcaggatcaccttgaggagactgtggag
atgtttgaagtgctgctggtctcccctgaaggcgccgtgatcggcagcatcagcaaggct
caagtcaccatcagggactcgggaagcggtcagccccggctgcaccaggatcacgaggct
cctcttcttgtagggaaagaggtccggtcagacacgtacccccgacatggatccattcag
ctagagaagctgcccctcggcacagagtcagtggtctgggcccgtggagacagcatctcc
aggcccggagcacatgtcccaaaaaagaaacttcaagttatgggcaacccaaagtctatt
gcaccttcatcggtttttcacaacgggacagacatcgtttacacgtatcatggcatcatg
caaatgcaggtagaggacaacacctccccatcgaggacgggcagaaaggcaaacatccgt
gtggttagcaggggagcacagccgcaggagctcactgagccagagtcagagcctcacaga
cagatctcaaaaccacaaaacaccgcactggctaaaggacatgctaaagctgataacacc
atagcaaagccctgtgtgccagagctgatgggactcctgcacttcaaccagacaagcaac
cagctctttcactgcaatggtgtctcctggaaaccctgggcaccaactgatcagatggtg
agtgctcagatgtgtggtcagggctggacctttcatggtggctactgttactcccttagc
agcgagcccaaagtcacatggagcgcagctaacagggcctgcagagagagatacaaaggc
tctttagcaagcgttctctctaaagtcgacatggactggctgtgggacttcagtggaaga
aaacctttttggataggcctgagtgacagggacggccgaggacgctgggaatgggcggct
ggtgagccggtcagctacaccaactggaaaaagacgcctcctcggtccaaaaggaagagg
aacaaaaagtgtgtcctggtgtggagaagggcaaagtggcaaatcagggactgcaagaca
agtagaggccatcgcttcgtgtgttcaagaacaacttga
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integrated database retrieval system
