KEGG   Cyclopterus lumpus (lumpfish): 117747654
Entry
117747654         CDS       T09199                                 
Symbol
cul4a
Name
(RefSeq) cullin-4A isoform X1
  KO
K10609  cullin 4
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03420  Nucleotide excision repair
clum04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117747654 (cul4a)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117747654 (cul4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:clum04121]
    117747654 (cul4a)
   03400 DNA repair and recombination proteins [BR:clum03400]
    117747654 (cul4a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117747654 (cul4a)
Ubiquitin system [BR:clum04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     117747654 (cul4a)
DNA repair and recombination proteins [BR:clum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      117747654 (cul4a)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117747654 (cul4a)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117747654 (cul4a)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 117747654
NCBI-ProteinID: XP_034412956
Ensembl: ENSCLMG00005000175
LinkDB
Position
3:complement(10919910..10927922)
AA seq 805 aa
MLPSKDHRLNKEFVSPTVNKQAFEPPAVHSNLVKHLDHTAVSQRANLIMAEDTRQDKRAS
FSAITEHNTNGMARTSAVASSKSGASKKLVIKNFKDRPKLAENYTEDTWLKLRDAVGAIQ
NSTSIKYNLEELYQAVENLCSYKVSPTLYKQLRQVCEDHVQAQIKQFREESLDNLSFLKR
MNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRTHIVSDSAVQKRTVD
GILEQIELERNGETVDRSLIRSLLGMLSDLQVYKDSFEERFLVETNRLYAAEGQRLTQER
DVPEYLHHVAHRLEEENDRIMSYLDQSTQKPLISCVEKQLLGEHITAMLQKGLRILLDEN
RVAELALLYQLFSKVKGGLPTLLQFWRDYIKSFGGEIVCTPEKDKDMVQDLLDFKDKMDN
VAQSCFTRSEGFINAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATEEELERILD
KIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGM
FKDMELSKDIMIQFKQYIQNQSEPSNIELTVNILTMGYWPSYIPMEVHLPPEMVKLQEVF
KLFYLGKHSGRKLQWQPTLGHAVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSMEEIR
AATGIEEEELRRTLQSLACGKARVLNKNPRGKDVEDGDRFNFNNDFKHKLFRIKINQIQM
KETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLSHNLLVSELYNQLKFPVKPGDLKK
RIESLIDRDYMERDKETPNQYHYVA
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgctgccctccaaagaccaccggttaaacaaagagtttgtgtcgccgacagtaaataaa
caggcgtttgaaccacctgccgtccacagtaacttagtaaaacacttggaccatacagcg
gtaagccaacgtgctaatctgataatggcagaggacacccgacaggacaagagagccagc
ttctccgctataacggagcacaacaccaacgggatggccaggacctccgctgtggcctca
agcaaaagtggcgcctcaaagaaattagtgatcaaaaatttcaaagacaggccaaaatta
gcagaaaactatactgaggacacgtggctgaagctacgagacgcagtgggtgccatccag
aacagcacgtctatcaagtacaatctggaagagctctatcaggcggtagaaaacctctgt
tcgtataaagtctcgcccacgctgtacaagcagctacgtcaggtctgtgaagatcatgtg
caagcccagatcaaacagtttagagaagagtctttggacaacctttccttcctgaagcga
atgaatcgctgctggcaggaccactgcaggcaaactataatgatacgcagtatctttctc
ttcctggaccgtacctatgtgcttcagaactccctgctcccctccatctgggacactggg
ttggaattgtttcgtacccacattgtgagcgacagtgcagttcaaaagcgcacagtagat
ggcattctggagcagatcgaactagagcgaaatggagagacagtagaccgcagtctgatc
aggagcctgctgggcatgctgtcagacctacaggtttacaaagattcctttgaggagaga
tttttggttgagaccaatcgcctgtatgcagcagagggacagcgattgacgcaggagaga
gatgtgcccgagtacctgcaccatgtggctcatcggttggaggaagagaatgatcgtatc
atgagctacctcgaccagagcacgcagaagccacttattagctgtgttgagaaacagctt
ttaggagaacacattactgcaatgctacaaaaaggtctgaggatcctgctggatgagaat
cgagtggccgagctggccctcctctaccagctcttcagcaaggtgaagggaggactcccc
actctgctgcagttctggagagattacataaagtccttcggtggagagattgtatgtacc
ccagagaaagacaaggacatggtgcaagacctgctggactttaaggacaagatggacaac
gtggcacagagctgctttacgcggagtgagggattcatcaatgccatgaaggaggccttt
gagaccttcatcaacaagaggcccaacaaacctgctgaacttattgctaagtatgtggat
tcaaagttaagagccgggaacaaagaggctacagaggaggagctggagagaatcctggat
aagataatgataatcttccgtttcatacacggaaaagatgtgtttgaagctttttataag
aaggacttggccaagcgcctgctggtcggcaagagtgcgtctgttgacgctgaaaagtcg
atgctctcaaagctcaaacacgaatgcggagcagcatttaccagtaagctagaggggatg
ttcaaggacatggaactgtccaaagacatcatgatccagttcaaacagtatatacagaac
cagagcgagccaagcaacatagaacttactgtcaacatcctcacgatgggttactggcct
tcgtacatacccatggaggtccacttgcccccagagatggtaaaactccaggaggtgttc
aagctgttctacctgggcaagcacagtgggaggaagctgcagtggcagcccacactgggc
cacgctgtgctgaaggcggagttcaaagagggtaagaaggagctgcaggtctcgctgttc
cagacactggtgctgctgatgtttaacgagggagaagagttcagcatggaggagattcgc
gctgccactggcatagaggaggaagagcttagacgcactctgcagtccctggcctgtggt
aaagcacgcgtcctcaacaagaaccctcgagggaaagacgtggaagatggagatcgtttc
aatttcaacaatgattttaaacacaaactgttccgcataaaaatcaaccagattcagatg
aaggaaacggtagaggagcaggtcagcaccacagagcgtgtgtttcaagaccggcagtat
cagatcgatgctgctgtggtgcgcatcatgaagatgagaaagaccctcagtcacaacctt
ctggtatcggagctctacaatcagctgaagttccctgtaaagccgggtgatctgaagaag
cggatcgagtcgctcatagacagagactacatggaacgtgataaggagactcctaaccag
taccactatgttgcctga

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