Cyclopterus lumpus (lumpfish): 117748334
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Entry
117748334 CDS
T09199
Symbol
heatr1
Name
(RefSeq) HEAT repeat-containing protein 1 isoform X1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117748334 (heatr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clum03009
]
117748334 (heatr1)
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117748334 (heatr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_HEATR1
BP28CT
U3snoRNP10
HEAT
HEAT_EZ
Arm
Vac14_Fab1_bd
RTP1_C1
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
117748334
NCBI-ProteinID:
XP_034413867
Ensembl:
ENSCLMG00005009476
LinkDB
All DBs
Position
19:18867829..18896928
Genome browser
AA seq
2326 aa
AA seq
DB search
MTSLAHQLRRLALPQSDPNLLTRSEVASLLFDPKDAVSMDRSTFYALGCTGLEELMGIEP
AFLEFQDTLFSRASLTLERSVQSKEVNEKLDAGISLFLARLSPYFLLKPAHKCLEWLVHR
FHVQLYNADALLRCSLPFHDTNVFVRVLQLLHIRDAAARWGWLLGPQKAGVPLSRGALVA
HCYSDLSFMDFICSLVTGSVQAYSGRSGSCSQLRVIFSFYASTIVSALGAVEKVSDAIIS
KLLPFVHKGLKSSLTDYKAATLMIVCQLAVKVTMEASLVDILAAHVAKSLLGEPVLAKEG
LGCLVVLLQNQKEGSAGPRASVSLSSVPALASTLQAMAAAHDVAPLLRYLLPHLIHAAFT
CRSGETQKDQLAVLEAVLKSVPLTNGLDRTVARWILDGYLRQTELSADDSSAFDRRLLPL
VRLFESRYCAALDGVLAGHVTADGEKRLYHQFLSLSVSSGKHQMLGDSDTSLLLSLKHPQ
PSVRVSALEHLVGVIASAQQSLDKTFLKDAVMERLKDDVPEVVSAALKVLEVLLDVLDPD
DVVLSLLSLLHRADLSVAESWLPVLTEAVRLLSDPRLGKGDAELLQKAGWRLLPLLVITS
SAELRFASCVARCSVVCRHPLTQNWAQELEEVMKRSSEPDFLGLANERLVSTLTKNLTSM
ELFSRRDALEQLALSVERQRGPGLRARASFPVLTQTLLLGLGGLSETQHLLTAQRVYALL
EAPLMEVIGAAAAQEDGRCVSDAPSSFSGALTLYLSRCGQQPGERLDREFSFVLIALLRD
FICSLRCHDASFKGDVWWNPEKLDTNTCCYLGLTCRLFSVIIRGAGEGPASGSFRDLMKL
LIKVHLCEPPMLFRFLCVLWGYGSNHGDQLDVKVGAVLQTRALYVGGAVLSAQPSTMLEQ
LAAADSPVVPSLLCCLTSPVREVRRAALGTLSSLSGAGASPFRPITERLLKNSEEIIADP
SYLSQALGVLQEESVKAKRLRSSLQQLLQSAGTPGCPSYSACSLLRALSHANGPAVLSEL
LPVLDRLLEQSGPDTPSLLRSEAQLMHLVLGKYNEASAPLLAENQNCLDLFVRALRNSTQ
PHPDIPSCQIIALEQMTKPFFSALGGEAVQQKLLSAMLDVLLESRSPLVTDTVRSVFKGM
AVDGQLVANELAPPEKPKVSVTVQQSRRSRMSQRKPVEAGDGGPAGGAVSWQRVTLILEL
LQHKKKLKRAQTLVPVLFALLASRRGDSEANANRAPCSRSLDPCPADHTNMEYTKQLLLG
CLLNVCHRLSPAGGAVGPDLLDEDKFSVELVVQCIRASDVPQTHHHALLLLGAAAAIFPE
KVLLNIMPIFTFMGANIMRLDDAYSFRVIDQTVQMVIPALIQVRETGTSTGWRRGPPPGG
DGDLHRVETGYLLETGYLHRVETGYLLETGYLHRVETGYLLETGTSTGWRRGTSWRRGPP
PGGDGVPPGDGDLHRVETGTSTGWRRGTSTGWRRGTSWRRGPPPGGDGDLHRVETGYLLE
TGTSTGWRRGTSWRRGPPPGGDGDLHQLETGPSPSPLSPPPPQAHQLSDGTSSSHVVAVV
TRILHVFADALPHVPDHRRLPILSQLVTTLGPARFLWVLMLLLFKLHATQTATSTSEKDA
ALERDVDFWVSLCCEFKVSEQLSSLISILLFLLKLPDDKHDAPVTRRPEPKKEVEEEVEE
LIFSLEAHSSKELRHFQFLSVSFMAQLLGSAGFIGKVADGADAVDESLQQRLLEEILRYI
HAVARRAEDNADKPTAKFWRVLLNKAYEVLDKVNSLLPTDTFITVMRGLMGNELASVRRK
AMELLNNKLQHRTQWEDRQVTVLLQLTGDLLSIVGKSSGEVMEREAEHAINRQTALYSLK
LLCRSFGSAHQEAFVPVLQRAVDIAAAPEEEKNVTGSALLCIAEVVGALKALAIPHLPRL
MPAVLNTLTDRKELLTNEIYLLSAVTALQRVTETLPHFISPYLQDTTSQVCRLTRLLESS
SSSSSAATQLSTRLASLRSTLATRLPPRVLLPTVTRCYGSMVVDRKRQLGALMSILKEHI
THMEKDQLSFHQSELTSFFLCALDFRAEHCQGDLQKTSEVEGHVIDCLLSMVMKLSEVTF
RPLFFKLLDWSKLGRERLLTFCRLSDVFADRLKGLFVLFAGNLVTGFVDLLRQTNGSKTD
ESLFDSKVKTNQLLRFVLDCLFKIFMFDTQKFVSRERGDALMSPLVDQLENTVGGDQVYQ
QLVTQHLVPCVGQFSVALADESQWKTLNYQILLKTRHPDSKVRFSSLLMLMELASKLKEN
YMVLLPETIPFLAELMEDDCEEVEQQVQKVVQEMEKILGEPLQSYF
NT seq
6981 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcattggcccaccagctgaggaggctcgcgctgcctcagagcgaccccaacctg
ctgacccgcagcgaggtggcctcgctcctcttcgaccccaaagatgccgtttccatggac
aggagcaccttctacgccctcggctgcacggggctggaggagctgatgggaatcgaaccc
gccttcctggagttccaggacaccctgttcagccgggcctcgctgaccctggagcgcagc
gtccagtccaaggaggtcaacgagaagctggacgccggcatctcgctcttcctcgcccgc
ctctcgccgtacttcctcctgaagccggcgcacaagtgcctcgagtggctggtccaccgc
ttccacgtgcagctctacaacgccgacgctctgctgcgctgctcgctgccgttccacgac
accaacgtgttcgtcagagtgctgcagctgctgcacatcagggacgccgccgcccgctgg
ggctggctgctcggcccgcagaaagccggcgtgccgctctccagaggcgctcttgtcgct
cactgctactcagacctgagcttcatggacttcatctgctcgctggtcaccggctctgtg
caggcgtactctgggcgctctggaagttgctcccagctcagagtgatcttctccttctac
gcctccaccatcgtctctgctctgggcgctgtggagaaagtgtccgacgccatcatctcc
aaactgctgccctttgttcataagggtctgaagtcgtctctgacggactacaaagccgcc
accttgatgatcgtgtgccagctggcggtgaaggtgacgatggaggcgagtctggtcgat
atcctcgccgcacacgtcgccaagtctctgctcggggaacccgtgttggccaaggagggt
ctgggctgcctcgtggtgctgcttcagaaccagaaggagggctccgccgggcccagggcg
tccgtgtctctgagctccgtgccggcgctcgcctccacgctgcaggcgatggcggcggct
cacgatgtcgctcctctgctgcgctacctgctgccgcacctgatccacgccgccttcacc
tgccgctcaggtgagacgcagaaggaccagctcgccgtgttggaggcggtcctgaagtcc
gtccctctgaccaacggcctggaccgcaccgtggctcggtggattttggacgggtacctg
cgtcagaccgaactctctgctgacgactcgtcggccttcgaccgccgcctccttcctctg
gtccgactgttcgagtccagatactgcgccgctctggacggcgtgctcgccggtcacgtg
accgccgacggcgagaagcgtctctaccaccagttcctcagtctgtccgtgagcagtggg
aaacaccagatgctgggcgactcagacacgtcgctgctcctcagtctgaagcacccgcaa
ccttcagtcagagtgtcggccctggagcacctggtgggcgtcatcgcctcggcacagcag
agtttagacaaaacgtttctgaaagacgctgtcatggagcgactgaaggacgacgtgccc
gaggtcgtgtccgctgctctcaaagtcctggaggtgctgcttgacgtgttggaccctgac
gacgttgtgttgtctttactgtcgctgctgcacagagccgacctgtcggtggccgagagc
tggctgccggtactgacggaggcggtgcgtttactgtccgacccccggctgggaaaaggg
gacgccgagctgctgcagaaggcgggctggaggctgctgcccctcctggtgatcacctcc
tccgccgagctccgcttcgcctcctgcgtcgcccgctgctccgtcgtctgccggcacccg
ctcacccagaactgggctcaagagctggaagaggtgatgaagaggagcagcgaacccgac
ttcctgggtttggccaacgagcggctcgtctccacgttgaccaagaacctgacgagcatg
gagctcttctccaggcgggacgccctggagcagctggctctgtcggtggagcggcagcgg
ggccccgggctccgagccagggcctccttcccggtgctgacccagacgctgctgctgggc
ctgggggggctcagcgagacccagcacctgctcaccgcccagcgcgtctacgcgctgctg
gaggcgccgctgatggaggtcatcggggccgccgccgcgcaggaagatggccgctgtgtc
tccgacgccccctcctccttctctggagccctgactctgtacctgagcaggtgtgggcag
cagccaggtgagcggctggacagagagttcagcttcgtcctgatcgctctgctcagagac
ttcatctgctccctcaggtgtcacgacgcctccttcaaaggtgacgtgtggtggaacccg
gagaagctggacacaaacacctgttgttatctggggctcacctgccgcctcttcagtgtc
atcatcagaggcgccggcgagggtccggcttctggtagcttcagagacttaatgaagctg
ctcatcaaggttcacctgtgcgagccgccgatgctcttccgcttcctgtgcgtgctgtgg
ggctatggcagtaaccacggcgaccagctggacgtgaaggtgggcgccgtcctgcagacc
cgggcgctgtatgtgggcggagctgtcctgagcgcccagccgtccaccatgctggagcag
ctggctgccgccgactcacctgtggtcccgtccttgctctgctgtctcacctctccggtt
cgggaggtccggagggcggcgctcggcactctgagcagcctatcgggagccggcgcgtct
cccttcaggccaatcacagagaggcttctgaagaactcggaggagatcatcgccgacccg
tcgtacctgagccaggctctcggcgtgctgcaggaggagtctgtgaaagcgaagcggctg
cggtcgtctctccagcagctgcttcagagcgccgggactcccggctgcccgtcctacagc
gcctgcagcctgctgcgagcgctgagccacgccaacgggccggccgtcctgtccgagctg
cttccggttctggatcggctcctggagcagagcggccccgacacccccagcctgctgcgg
tccgaggcccagctgatgcacctcgtcctggggaagtacaacgaggcgtcggcgcccctg
ctggccgagaaccagaactgtttggacctgtttgtcagagctctgaggaactcaacccag
ccgcaccccgacatccccagctgccagatcatcgccctggaacagatgacgaagccgttc
ttctcggccctcggaggagaggcggtgcagcagaagcttctgtcggccatgttggacgtg
ctgctggagagccggagtcctctggtgaccgacaccgtgcgcagcgtctttaaagggatg
gcggttgacggccagctggtggccaatgagctcgctccacctgagaaacccaaagtgagc
gtgacggtgcagcagagccgccggagccggatgagtcagaggaagcccgtggaggccggc
gatggcggtccagcagggggcgctgtgtcgtggcagagagtcacgctgatcctggagctg
ctgcagcacaagaagaagctgaagagggcccagacgttggtgccggttctgttcgctctg
ctcgccagcagacgtggtgacagtgaggctaacgctaaccgtgccccgtgctccaggagt
ctggatccgtgtccggccgatcacaccaacatggagtacaccaagcagctgctgctcggc
tgcctgctcaacgtgtgccaccggctgagtcctgcagggggcgctgtgggtcccgacctt
ctggatgaagacaagttcagcgtggagctcgtggtccagtgcatccgagcatccgacgtg
ccgcagacgcaccaccacgccctgctgctgctcggcgccgccgccgccatcttccccgag
aaggtgttgctcaacatcatgcccatcttcaccttcatgggagccaacatcatgcgactg
gacgacgcctacagcttcagagtcatcgaccagacggtgcagatggtgattcctgctctg
atccaggtgagagagacggggacctccaccgggtggagacggggacctccaccgggtgga
gacggggacctccaccgggtggagacggggtacctcctggagacggggtacctccaccgg
gtggagacggggtacctcctggagacggggtacctccaccgggtggagacggggtacctc
ctggagacggggacctccaccgggtggagacggggtacctcctggagacggggacctcca
ccgggtggagacggggtacctcctggagacggggacctccaccgggtggagacggggacc
tccaccgggtggagacggggtacctccaccgggtggagacggggtacctcctggagacgg
ggacctccaccgggtggagacggggacctccaccgggtggagacggggtacctcctggag
acggggacctccaccgggtggagacggggtacctcctggagacggggacctccaccgggt
ggagacggggacctccaccagctggagacgggtccatcaccttctcctctttctcctcct
cctcctcaggcccaccagctctctgacggcacctcctcctctcacgtggtcgcggtggtc
actcggatccttcacgtgttcgccgacgctcttcctcacgtgccggatcaccggcggctg
cccatcctcagtcagctggtgaccacgctgggccccgcccgcttcctctgggtcctaatg
ctcctcctgtttaagctgcacgccacgcagaccgccacctccacgagcgagaaggacgcc
gctctggagagagacgtggacttctgggtctctctctgctgcgagttcaaggtgagcgag
cagctctcctccctcatcagcatcctcctcttcctcctgaagctgcccgacgacaagcac
gacgctccggtgacgcgtcggccggaacccaagaaggaggtggaggaggaggtggaggag
ctgatcttcagcctggaggctcacagcagcaaagagctgaggcacttccagttcctctcc
gtgtccttcatggctcagctgctcggctcggccggcttcatcgggaaggtggcggacgga
gccgacgccgtggacgagtctctgcagcagaggctgctggaggagatcctgcgctacatc
cacgccgtcgctcgccgcgcggaggacaacgccgacaaacccaccgccaagttctggagg
gttctgctcaacaaggcctacgaagtcctggataaggtgaactccttgttgcccacggat
accttcatcacggtgatgagggggctgatgggtaatgagctggcgtccgtcagaaggaag
gcgatggagctgctgaacaacaaactgcagcaccggactcagtgggaggaccgacaggtc
actgtgctcctacagctgaccggcgacctcctgagcattgtgggtaaaagcagtggcgag
gtgatggagcgggaggcggagcacgccatcaaccgtcagacggcgctctacagcctcaag
ctgctctgtcgcagctttggctccgcccaccaggaggcattcgtccccgtcctgcagcgg
gcggtcgacatcgccgcggcgccggaggaggagaagaacgtgacgggcagcgctctgctc
tgcatcgccgaggtggtcggcgcgctgaaggccctcgccatcccacacttacccaggttg
atgccggcggtgctgaacacgctgacggacaggaaggagctgctgaccaatgagatctac
ctgctgagcgccgtcaccgccctccagcgcgtcaccgagacgctgcctcacttcatcagc
ccgtacctgcaggacaccacctcacaggtgtgtcggctgactcggctgctggagtcttcc
tcgtcctcttcctcggccgccactcagctgtccacgcgcctcgcctccctcaggagcacc
ctcgccacccggctgccccccagggtcctactgcccaccgtcaccaggtgctacggcagc
atggtggtcgacagaaagcgccagctgggggcgctgatgagcatcttgaaggaacacatc
actcacatggagaaggaccagctgagcttccaccaatcagagctcacatccttcttcctc
tgcgccctggacttcagagccgaacactgtcagggcgatctgcagaagacgtcagaggtc
gaaggtcatgtgatcgactgtctgctctcgatggtgatgaagctgtcggaggtcacgttc
aggccgctgttcttcaagctgctggactggagtaaactcggccgtgagcgcctgctgacg
ttctgccggctgtcggacgtcttcgccgacagactcaaaggcctcttcgtgctgttcgcc
ggcaatctggtgaccggcttcgtagacctgctgaggcagaccaacggctccaagacagat
gagtctctgttcgactccaaggtgaaaaccaatcagctgctccggttcgtcctcgactgt
ctctttaagatcttcatgttcgacactcagaagttcgtcagcagagaacgaggcgacgcc
ctgatgagccctctggtggaccagctggagaacaccgtgggaggagaccaggtgtaccag
cagctggtgacccagcacctggttccctgtgtgggtcagttctctgtggcgctggctgac
gagtctcagtggaaaaccctcaactaccagatcctcctgaagaccagacatcccgactcc
aaggtgcgtttctcctctctgttgatgttgatggagttggcgtccaaactgaaggagaac
tacatggttcttctcccagagaccatccccttcctggctgagctgatggaggatgactgt
gaggaggtggagcagcaggtccagaaggtggtgcaggagatggagaagatcctgggagaa
ccgcttcagagctatttctaa
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integrated database retrieval system
