KEGG   Cyclopterus lumpus (lumpfish): 117748425
Entry
117748425         CDS       T09199                                 
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    117748425 (msh2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clum03400]
    117748425 (msh2)
DNA repair and recombination proteins [BR:clum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     117748425 (msh2)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II AAA_27 Anticodon_2
Other DBs
NCBI-GeneID: 117748425
NCBI-ProteinID: XP_034414043
Ensembl: ENSCLMG00005018336
LinkDB
Position
19:complement(13820184..13828482)
AA seq 933 aa
MAVQPKQNLSADSAAEPGFLSFMSSMPEKPDTTFRIFDRNEYFTVHGKDAIFAAREVFKT
NAVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKVDYKA
SPGNLTQFEEILFGGGTGAVGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGECNTDGNKLREVVQRGGILISDRKRAEFSSKDMVQDL
NRLLRAKRGATVASNTLPELDNQVAMSCLASVVRFLELLSDESNFNSFSLATLDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHSATLQDCFRVYQAVSHVPALVSAL
ERYSGSYQVLLEAVLISPLRDLQADFVKYQEMIETTLDMNQIDHHEFLVKASFDPALSEL
REKMDALEKSMQAVLTTAARELGLDAGKTVKLESNAILGFYLRVTCKEEKSLRNNKKFST
LDVQKNGVRFTNGKLSSLNEEYTKNRGEYEEAQNAIVKEIINIAAGYVDPLQALSDVTAQ
LDAVASFAVASVSAPVPYVRPRLLADGCRRMELLQARHPCMETDADTAFIPNDISFAEGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASEISCFCLFA
THFHELTALAAQQPTVHNLHVTALTSHNTLTMLYRVKSGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPAGETSEEPEAKRRRTDKQAGEHLIQDFLEEAKSLAAAATLSEEE
VKAALKKMKQELVAKNNTYITDILSRCGPAKTT
NT seq 2802 nt   +upstreamnt  +downstreamnt
atggcggtgcagccgaagcagaacctgtccgcggacagtgcggccgagccgggcttcctg
agcttcatgtcctccatgccggagaagccggacactactttcagaatattcgaccgcaac
gagtacttcactgttcacggaaaggacgccatattcgcggcgagggaggttttcaagacg
aatgctgtcatcaaatatttgggctcagggagtcgcaagctggagagtgtggtgctgagc
aagctgaacttcgaggcctttgtgaaagacttgctgctggtgaggcagtacagagtggaa
gtgtacaagaaccacagcaagagcagcaaggagcacgactggaaggtcgactacaaggca
tctccgggaaacttgactcagtttgaggagattctgttcggtggtggtaccggagcagtg
ggttgtgcgggagttgtagccgtgcggttcgcaaccggagccgatggacagcgagtggtc
ggggtcggctacgtggacgcagcccagaggacgatgggagtgtgcgagttccccgacaac
gagatcttctccaacctcgagtcccttctggtccaaatcagccccaaagagtgtctcttg
gcccagggcgaatgcaacactgacggcaataaactacgggaggtggtccagcggggcggc
attctgatctcggacagaaagagggccgagtttagcagcaaggacatggtccaggatctc
aacaggctgctgagggccaagagaggagcgactgtggcgagcaacacgctgcctgagctg
gacaaccaggtggccatgtcgtgcctggcttcagtggtgcgtttccttgaactgctctcg
gacgagtccaacttcaactccttcagtctcgccacactggacctgggtcagtacatgaga
ctggacaacgctgccgtgagggctctcaacctcttccagggatcacctgatgacaccagc
ggagctcattcgctggccggcctgttgaacaagtgccgcacgccgcagggccagcgtctc
gtcaaccagtggatcaaacaaccgctcatggacaaaaccaaaatagaggaaaggctggac
ttggtggagagcttcgtctgcgactccgagctgaggcagacctgtcaggaggacttgctc
cggcgctttccggatcttcaccgtcttgccaagaagttccaccgtcactccgcgacgctg
caggactgcttccgcgtctaccaggccgtgagccacgtccccgccctcgtctccgccctg
gagagatactcgggtagctaccaggttctgttggaggcggtgttgatctctcctctcaga
gacctacaagctgactttgtgaagtaccaggagatgattgaaaccacactggacatgaac
cagattgaccaccatgagttcctggtgaaggcgtccttcgatccagcgttgagtgagctg
agagaaaagatggacgctctggaaaagagcatgcaggcggtgctgaccactgcagccaga
gaactaggtctggatgctgggaagacggtgaagctggagtcgaatgccatcctgggcttc
tacctgagggtcacctgcaaggaggagaagagtctgaggaacaacaagaaattctccacg
ctggacgtccagaagaacggagtgcgcttcacaaacggcaagctgagttccctgaacgag
gagtacaccaagaacagaggggagtacgaggaggcccagaatgccattgtcaaagagatc
atcaacatcgccgcagggtacgtggatcctctccaggcgctgagcgacgtgaccgctcag
ctggacgcagtggcgagtttcgccgtggcgtcggtctccgctccggtgccgtacgttcgg
ccccggctgttggcggacggctgcaggcgtatggagctgctgcaggccaggcacccctgc
atggagacggacgcagacaccgccttcatacccaacgacatatccttcgccgagggagag
aagaacttctacattataacaggaccaaatatgggtggcaagtcaacatttatccgacaa
gtgggtgtgattgccctgatggctcagattggctgctttgtgccatgtgaaaaggcggag
cttagtgtgattgacagcatcctggccagggtgggagcgggagacagccaggtcaaagga
gtctccacctttatgtccgagatgctggagacggctgccatcctgcgctcggccacggag
aactcgctcatcataatcgacgagctcggccgaggcacgtccacatacgacggcttcggc
ctggcttgggccatcagcgaacacatcgcctccgaaatcagctgcttctgtctgttcgcc
actcacttccacgagctgacggcgctggcagcgcagcagccgaccgtccacaacctgcac
gtcacggccctgacctcccacaacacactcacgatgctgtaccgggtcaaatcaggtgtg
tgcgatcagagttttggaatccacgttgccgagttggcgtgcttcccgccatcggtggtt
gccatggcgaaggaaaaggctgaggagctggaggagttccaggaacccgcaggggagacg
tcagaagagcccgaggccaagaggcgacgcacagacaaacaagcgggggaacatctgatc
caggacttcctggaggaggcaaagtcactcgctgctgctgccaccctgagtgaagaggag
gtgaaggcggccctcaagaaaatgaagcaggagcttgtagccaaaaacaacacgtacatc
acagacatcctgtcccgctgtggccccgcaaaaacaacttga

DBGET integrated database retrieval system