Cyclopterus lumpus (lumpfish): 117748425
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Entry
117748425 CDS
T09199
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117748425 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117748425 (msh2)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117748425 (msh2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Anticodon_2
Motif
Other DBs
NCBI-GeneID:
117748425
NCBI-ProteinID:
XP_034414043
Ensembl:
ENSCLMG00005018336
LinkDB
All DBs
Position
19:complement(13820184..13828482)
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AA seq
933 aa
AA seq
DB search
MAVQPKQNLSADSAAEPGFLSFMSSMPEKPDTTFRIFDRNEYFTVHGKDAIFAAREVFKT
NAVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKVDYKA
SPGNLTQFEEILFGGGTGAVGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGECNTDGNKLREVVQRGGILISDRKRAEFSSKDMVQDL
NRLLRAKRGATVASNTLPELDNQVAMSCLASVVRFLELLSDESNFNSFSLATLDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHSATLQDCFRVYQAVSHVPALVSAL
ERYSGSYQVLLEAVLISPLRDLQADFVKYQEMIETTLDMNQIDHHEFLVKASFDPALSEL
REKMDALEKSMQAVLTTAARELGLDAGKTVKLESNAILGFYLRVTCKEEKSLRNNKKFST
LDVQKNGVRFTNGKLSSLNEEYTKNRGEYEEAQNAIVKEIINIAAGYVDPLQALSDVTAQ
LDAVASFAVASVSAPVPYVRPRLLADGCRRMELLQARHPCMETDADTAFIPNDISFAEGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASEISCFCLFA
THFHELTALAAQQPTVHNLHVTALTSHNTLTMLYRVKSGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPAGETSEEPEAKRRRTDKQAGEHLIQDFLEEAKSLAAAATLSEEE
VKAALKKMKQELVAKNNTYITDILSRCGPAKTT
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcagaacctgtccgcggacagtgcggccgagccgggcttcctg
agcttcatgtcctccatgccggagaagccggacactactttcagaatattcgaccgcaac
gagtacttcactgttcacggaaaggacgccatattcgcggcgagggaggttttcaagacg
aatgctgtcatcaaatatttgggctcagggagtcgcaagctggagagtgtggtgctgagc
aagctgaacttcgaggcctttgtgaaagacttgctgctggtgaggcagtacagagtggaa
gtgtacaagaaccacagcaagagcagcaaggagcacgactggaaggtcgactacaaggca
tctccgggaaacttgactcagtttgaggagattctgttcggtggtggtaccggagcagtg
ggttgtgcgggagttgtagccgtgcggttcgcaaccggagccgatggacagcgagtggtc
ggggtcggctacgtggacgcagcccagaggacgatgggagtgtgcgagttccccgacaac
gagatcttctccaacctcgagtcccttctggtccaaatcagccccaaagagtgtctcttg
gcccagggcgaatgcaacactgacggcaataaactacgggaggtggtccagcggggcggc
attctgatctcggacagaaagagggccgagtttagcagcaaggacatggtccaggatctc
aacaggctgctgagggccaagagaggagcgactgtggcgagcaacacgctgcctgagctg
gacaaccaggtggccatgtcgtgcctggcttcagtggtgcgtttccttgaactgctctcg
gacgagtccaacttcaactccttcagtctcgccacactggacctgggtcagtacatgaga
ctggacaacgctgccgtgagggctctcaacctcttccagggatcacctgatgacaccagc
ggagctcattcgctggccggcctgttgaacaagtgccgcacgccgcagggccagcgtctc
gtcaaccagtggatcaaacaaccgctcatggacaaaaccaaaatagaggaaaggctggac
ttggtggagagcttcgtctgcgactccgagctgaggcagacctgtcaggaggacttgctc
cggcgctttccggatcttcaccgtcttgccaagaagttccaccgtcactccgcgacgctg
caggactgcttccgcgtctaccaggccgtgagccacgtccccgccctcgtctccgccctg
gagagatactcgggtagctaccaggttctgttggaggcggtgttgatctctcctctcaga
gacctacaagctgactttgtgaagtaccaggagatgattgaaaccacactggacatgaac
cagattgaccaccatgagttcctggtgaaggcgtccttcgatccagcgttgagtgagctg
agagaaaagatggacgctctggaaaagagcatgcaggcggtgctgaccactgcagccaga
gaactaggtctggatgctgggaagacggtgaagctggagtcgaatgccatcctgggcttc
tacctgagggtcacctgcaaggaggagaagagtctgaggaacaacaagaaattctccacg
ctggacgtccagaagaacggagtgcgcttcacaaacggcaagctgagttccctgaacgag
gagtacaccaagaacagaggggagtacgaggaggcccagaatgccattgtcaaagagatc
atcaacatcgccgcagggtacgtggatcctctccaggcgctgagcgacgtgaccgctcag
ctggacgcagtggcgagtttcgccgtggcgtcggtctccgctccggtgccgtacgttcgg
ccccggctgttggcggacggctgcaggcgtatggagctgctgcaggccaggcacccctgc
atggagacggacgcagacaccgccttcatacccaacgacatatccttcgccgagggagag
aagaacttctacattataacaggaccaaatatgggtggcaagtcaacatttatccgacaa
gtgggtgtgattgccctgatggctcagattggctgctttgtgccatgtgaaaaggcggag
cttagtgtgattgacagcatcctggccagggtgggagcgggagacagccaggtcaaagga
gtctccacctttatgtccgagatgctggagacggctgccatcctgcgctcggccacggag
aactcgctcatcataatcgacgagctcggccgaggcacgtccacatacgacggcttcggc
ctggcttgggccatcagcgaacacatcgcctccgaaatcagctgcttctgtctgttcgcc
actcacttccacgagctgacggcgctggcagcgcagcagccgaccgtccacaacctgcac
gtcacggccctgacctcccacaacacactcacgatgctgtaccgggtcaaatcaggtgtg
tgcgatcagagttttggaatccacgttgccgagttggcgtgcttcccgccatcggtggtt
gccatggcgaaggaaaaggctgaggagctggaggagttccaggaacccgcaggggagacg
tcagaagagcccgaggccaagaggcgacgcacagacaaacaagcgggggaacatctgatc
caggacttcctggaggaggcaaagtcactcgctgctgctgccaccctgagtgaagaggag
gtgaaggcggccctcaagaaaatgaagcaggagcttgtagccaaaaacaacacgtacatc
acagacatcctgtcccgctgtggccccgcaaaaacaacttga
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