Cyclopterus lumpus (lumpfish): 117748528
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Entry
117748528 CDS
T09199
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117748528 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117748528 (smarcd2)
03036 Chromosome and associated proteins [BR:
clum03036
]
117748528 (smarcd2)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117748528 (smarcd2)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117748528 (smarcd2)
PBAF complex
117748528 (smarcd2)
GBAF(ncBAF) complex
117748528 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
117748528
NCBI-ProteinID:
XP_034414252
Ensembl:
ENSCLMG00005013932
LinkDB
All DBs
Position
19:9825378..9834258
Genome browser
AA seq
500 aa
AA seq
DB search
MASRGGFTPMNMNVSPMHVGHPAGMRMPGLPQSPAGYPRSMSNAPLYPQRSGMPSNRLGG
PMGSMGGQLPGPSYGGGNMPMRQGMGPPSMEASRKRFLHLHQQQQQEALGGLRRGAKRRK
MADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPIMQKRKLRIYIS
NTYTPSKPEGEEAEKVSSWELRVEGKLLEEPGKQKRKFSSFFKSLVIELDKELYGPDNHL
VEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASI
MQALWLYIKNNKLQDCHEKEFINCNRYFRQIFGCPRMRFSEIPMKLASLLQHPDPIIINH
MISVDPTDQKKTACYDIDVEVDDPLKGQMNSFLSSTTNQQEIAALEIKIHETIEYINQLK
TERDFMLSFSNKPQDFIQDWLKSQCRDLKLMTDVTGNPEEERRTEFYQAPWVPEAVGRYV
YSRLQQRRQELEQVLGIRLT
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaagaggaggcttcactccgatgaatatgaacgtgagccccatgcatgttggg
caccccgcgggtatgaggatgccaggtctgccccaatctccggcgggatacccccggagc
atgagcaacgcgcccctgtacccccagcgctcagggatgccatccaacagattggggggc
cccatggggtcaatggggggccagctgcctggtccttcttatggtggtgggaacatgccc
atgaggcaaggcatggggcctccaagcatggaggcctcgaggaaacggttccttcatctg
catcaacagcagcagcaagaggcactgggaggcctaagacgaggagcaaaaagacgcaag
atggctgataaggttctcccacagaggatccgagacctggtcccagagtcccaggcctac
atggatctcttggcatttgagaggaaactggatcagaccattgcccgaaagcgtatggaa
attcaggaagccatcaagaagcctattatgcaaaaacgtaagctcaggatctacatttct
aacacgtacacccccagcaaacccgagggcgaggaggcagagaaggtgtcctcctgggaa
ctgagagtggagggaaaacttctggaggaacctggcaagcagaagaggaaattctcatct
ttcttcaaaagcctggtgattgagcttgataaggagctctatggacctgacaaccactta
gtagagtggcacagaatgcccactactcaggagacggatggtttccaagtcaaaaggccc
ggcgacctgaatgttaaatgcaccctcctgctcatgctcgaccaccagccccctcagtac
aaactggacccacggttggctcgtctgctgggtgtgcacacacagacgcgagccagcatc
atgcaagccctgtggctctacatcaagaacaacaagctgcaggattgtcatgagaaggag
ttcatcaactgcaaccgctatttcagacagatcttcggctgtcctcgcatgaggttctct
gagattcccatgaaactggccagccttctgcagcaccctgaccccatcattatcaatcac
atgattagtgtggaccccacagatcagaagaagacggcgtgctatgacattgatgtggag
gtggacgatccactgaagggccaaatgaacagtttcctgtcctctacaaccaaccaacag
gaaattgctgcgctggagattaagattcacgagacgattgagtacatcaaccagctgaag
actgagagagactttatgctgagcttcagcaataaacctcaggatttcatccaggactgg
ctcaagtctcagtgcagagatctgaagttgatgacggatgtgacaggaaacccagaggag
gagaggagaaccgagttctaccaggctccctgggtaccagaggcagtcggcagatacgtt
tactccagattgcagcagagaagacaagagttggagcaggttttgggtatccgactcacc
taa
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