Cyclopterus lumpus (lumpfish): 117748541
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Entry
117748541 CDS
T09199
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35 isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117748541 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117748541 (vps35)
Membrane trafficking [BR:
clum04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
117748541 (vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
117748541
NCBI-ProteinID:
XP_034414271
Ensembl:
ENSCLMG00005000043
UniProt:
A0A8C2W9I1
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All DBs
Position
3:1584222..1600948
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AA seq
798 aa
AA seq
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MPTTQQSPQDEQEKLLDEAVQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVR
SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQPEGTEEMTGDIND
SIDFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNVDKY
KQIVLSGVLEQVVNCRDPLAQEYLMECIIQVFPDEFHLQTLNPFLRSCAELHQHVNVKNI
IIALIDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLA
MKCYPDRVDYVDKVLESTVDIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLQL
KHFPPLFEYFDYESRKSMSCYVLSNTLDYNTTILAQEQVDSILTLVSTLIQDQPDQPADD
PDPEDFAEEQSLVGRFIHLLHSEDPDQQYLILNTARKHFGAGGNLRIRYTLPPLVFAAYQ
LAFRYKENSSSDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFEN
HETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMRCFSEENHEPLRTQCALAAS
KLLKKPDQCRAVSICAHLFWSGRSTDKSGDEIRDGKRVMECLKKALKIANQCMDPSLQVQ
LFIEILNRYVCFYERENDAVTVQVLNQLIQKIREDLPNLEASEETEQINKHFHNTLEHLR
LQRESPESEGPAYEGLVL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccacacagcagtccccccaggatgaacaggagaagcttcttgatgaagctgtg
caggctgttaaggtccagtcgttccagatgaagcgatgcctggacaagaacaagctgatg
gatgctctgaagcacgcctctaacatgctgggggagctgaggacctccatgctttctcca
aagagctactatgagctatatatggctatctctgacgaactccactaccttgaagtttat
ctgactgatgagtttgccaaaggacgtaaggtggcagatctctatgagctggtccagtat
gcaggcaacatcatccctagactctatctgctgatcacagtgggtgtggtgtacgtccgc
tccttcccccagtctcggaaggacattctgaaggacctggttgagatgtgtcgtggtgtc
cagcacccactcaggggcctcttcctcagaaactacctgttgcagtgcacccgcaacata
ctgccagatgatggagagcagccagagggaacagaggagatgaccggtgacatcaacgac
tcgatcgactttgtcctcctgaattttgcggaaatgaacaagttatgggttcgaatgcag
catcagggtcacagccgagaccgagagaagagagaaaaggaacgacaagaacttaggatt
ctggtgggaaccaacctagtccgcctcagccagctggagggtgtcaacgtggataagtac
aaacagattgttctttctggagtgcttgaacaggttgtgaactgcagagacccgttggct
caggagtatctaatggagtgcatcattcaggttttcccagatgagttccaccttcagacc
cttaaccctttcctccgttcctgtgctgagctccatcagcacgtcaatgtcaagaacatc
atcattgccctcattgacagactcgctctctttgcccatcgagaagacggccctggcatc
ccagctgagattaaactgtttgacatcttctctcagcaagtggccactgtcattcaatct
cgccaggacatgccatcagaggacgtggtctctcttcaggtctctctcattaacttagca
atgaaatgctacccagaccgtgttgactatgtagacaaagtcctggagagcactgtggat
atcttcaacaagctcaacttggaacacatagcgaccagcagcgcggtgtcaaaggagctt
acccgactgttgaagatcccagtggatacctacaacaacatcctgacggtgctgcagctc
aagcacttcccaccgctcttcgagtactttgactacgagtcgcgcaagagcatgagctgc
tacgtgctgagcaacacgttggactacaacaccaccattctggcacaggaacaggtggac
tccatcttgaccttggtatccacactgattcaggaccagccagaccaaccagctgatgat
cctgaccctgaggattttgctgaggagcagagcctcgtgggtcgtttcatccatctgctc
cactctgaagatcccgatcagcaatatcttattctgaacacagcccggaaacattttggg
gcaggtggaaacctccggattcgctacacactccctcccctggtgttcgctgcctaccaa
ctggccttcagatacaaggaaaactcttcatcggatgacaagtgggagaagaagtgtcaa
aagatcttctcctttgcccaccagaccatcagtgctctcatcaaggctgagcttgctgag
ctgcctcttcgactcttcctgcagggggcgctggcggcaggcgagattggctttgagaac
cacgagactgtagcttatgagttcatgtcacaggccttctctctgtatgaggatgagatc
agtgactctaaagcccagctggctgccatcacactgatcatcggtacctttgagcgaatg
cgatgtttcagcgaggaaaaccacgagccgctgaggactcagtgtgcgctggccgcctcc
aagctgctgaagaagcctgaccagtgccgcgctgtcagcatctgtgcccatctcttttgg
tcgggtcgcagcaccgacaagagcggtgatgagattcgtgatggcaagcgggtgatggag
tgtttaaagaaagccctgaagattgccaaccagtgtatggacccatcgctgcaagtccag
ctcttcattgaaatcctcaacagatacgtctgcttctatgagagggaaaacgatgcggtg
actgtgcaggtattaaaccaacttatccagaagatcagggaagatcttcccaacctggag
gcaagtgaggaaacggagcagatcaacaaacacttccacaacacactggagcatcttcgc
ctgcagagagaatcccccgagtccgagggccccgcctatgagggcctggtcctttaa
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