Cyclopterus lumpus (lumpfish): 117748974
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Entry
117748974 CDS
T09199
Symbol
si:ch211-141o9.10
Name
(RefSeq) LOW QUALITY PROTEIN: probable endonuclease 4
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117748974 (si:ch211-141o9.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117748974 (si:ch211-141o9.10)
Enzymes [BR:
clum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
117748974 (si:ch211-141o9.10)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
117748974 (si:ch211-141o9.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-GeneID:
117748974
NCBI-ProteinID:
XP_034415031
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All DBs
Position
19:complement(6057492..6060081)
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AA seq
319 aa
AA seq
DB search
MGPRKRGSKKRKSEEALGGEKEGEDTEERRHRRKYRGNDKYIGAHVGFPGGIWKAVESCT
EMGGXAVFLGSQRSWKRPALDQIAALKFREQCSLQEXTSSHPASWVLYLMNCGSPKEDVF
EKSRALLVDEFSCCSLPGLTLYNFHPDLSLGSITTEQCVEKLAGAINHAHKQTPAVVTVL
ENMSGQGSTLGGKFSELRSIVDKVRDQTRVGVCLDTCHAFAAGYDVAAEGAAEAMLDEFD
QEVGLHYLKALHRNDYKGKLGCHLDRHEDVGKGHXSAFRDIVNEPRLDHIPLILXTPGQP
GFEYAEQVELLYSLFMRRQ
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgggtccgagaaagagaggatcaaagaaaaggaaatccgaggaggcgttgggaggcgaa
aaggagggagaggacaccgaggagaggagacacaggaggaagtaccgtgggaatgataaa
tacattggagctcatgtaggctttccaggtgggatatggaaagcagtggagtcctgcaca
gagatgggtggcnnagcggtgtttctgggctcccagcggtcatggaagaggcctgcactg
gaccagatagctgctctcaagtttagagagcaatgttctctacaggagtaaactagctca
catcctgcctcatgggtcctatacttgatgaactgtggatctcctaaagaagatgtgttt
gagaagagccgggccctgctggtggatgagttcagctgctgcagcctcccgggcctcacc
ctctacaacttccaccctgacttgtccctgggctccatcaccactgagcagtgtgtggag
aagttggcaggagccattaaccacgcccataagcaaacacctgctgtggttacagtgttg
gagaacatgagcggtcagggcagtacgctgggcggtaagttctctgagctgaggagcatc
gtagacaaagtgagagaccagaccagagtaggagtgtgtctggatacctgtcacgccttt
gccgcaggatatgacgtggctgcagagggagcagcggaggccatgcttgatgagtttgat
caggaagtgggactccactatcttaaagccctccatcgcaatgactacaaaggtaaacta
ggctgccaccttgatcgccatgaagacgttggtaaaggtcacnnatctgctttccgagac
atcgtcaatgagcccagactggaccacatccctctgatactgtagacacctggacagcca
ggttttgagtatgctgagcaggttgaacttctgtattccctatttatgagaagacaatag
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integrated database retrieval system
