Cyclopterus lumpus (lumpfish): 117749043
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Entry
117749043 CDS
T09199
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR-like isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04137
Mitophagy - animal
clum04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117749043
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117749043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117749043
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
117749043
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117749043
Multi subunit type E3
ERAD complex
117749043
LMBR1L-GP78-UBAC2 complex
117749043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
G2BR
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-rbx1
zf-RING_11
zf-ANAPC11
zf-RING_5
zf-RING_16
Prok-RING_4
zf-RING_Vps41
RING_XB3-XBAT31
zf-C3HC4_4
zf_RING_Vps8_fungal
zf_RING_Vps8
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
117749043
NCBI-ProteinID:
XP_034415139
Ensembl:
ENSCLMG00005005702
LinkDB
All DBs
Position
3:complement(19667897..19676148)
Genome browser
AA seq
615 aa
AA seq
DB search
MPLLFLERFPWPSLQTYTALSVALLAGSIFSAYTTVTDPGFGNLETEVEFEHLNNDINTE
LTTTVLWYIATDSLFVWVLVNTFCCLLMLIAKMIQYVVFGPLRVSEKQHLKDKFWNFIFY
KFIFIFGVLNVQTVEEVVMWCLWFSALVFLHLMVQLCKDRFEYLSFSPSTPMNSHVRVLC
LLVSLLLDCCGLAVGCGGLLGASHGMHTFSFMAAECLLVTVRTGHVIMRYSIHLWDLNHP
GTWESKGTYVYYTDFVMELSMLFLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQR
RVRRHKNYLRVINNMEARFAVATAEELAANDDDCAICWDAMLTARKLPCGHLFHNSCLRS
WLEQDTSCPTCRTSLNINADGGQARGQQQGGGLEENIGPAGAAPDAIPHINQHNHFFHFD
GSRIASWLPSFSVEVMHTTNILGIAQANNSQLMAMAHQIQEMFPQVPSYLVMQDLQLTRS
VEVTTDNILEGRIQVPFPTQAIERAPTQANTAPGDQQGSSGAAEQGFSESDSMEVRGGRF
SKSAEERQKMLKQRKEEMILQARRRYLNNSPEDLDEDLPGLEEDIVPDLNLTVLRRRTMA
AAAERRMQTQQDPAP
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgctttttttggagagatttccgtggcccagcctgcagacatacactgcactt
agtgtggctttgcttgctggcagcatctttagtgcctacaccactgtgactgatccaggg
tttgggaacttggaaactgaagtggaatttgaacatttaaataatgatattaacacagaa
ttgaccaccactgtcctgtggtatattgccactgacagtctctttgtttgggtattggtc
aacacattctgctgcttgttgatgttaattgctaaaatgattcagtatgtagtgtttggc
ccgctcagagttagtgagaagcagcacctgaaagataaattctggaatttcatcttctac
aagttcattttcatctttggggtattgaacgtgcaaacagtggaagaggtggtcatgtgg
tgtttgtggttctctgccttggtctttctccacctcatggtgcagctctgcaaagacaga
tttgaatacctatccttctcaccctccactcccatgaacagccatgtacgagtgctttgt
ctactggtctcattgctgttggattgctgtggactggctgtgggctgtggtgggctgctt
ggagcgtcccatggcatgcacacgttctcctttatggcagcagagtgtctgctggtgact
gtgcgcactgggcatgtcatcatgcgatattccattcatctttgggatctgaaccatcca
gggacctgggagagtaagggaacgtatgtctattacacagacttcgtcatggagctgtct
atgctcttcctggacctcatgcaccatatccatatgctgctttttggaaacatctggctg
tccatggcaagcttggttatctttatgcagctgcggtatctcttccatgaagttcagcgc
cgggtccgccgacacaagaactaccttcgtgtcattaacaacatggaggccagatttgca
gttgctactgcagaggagctggcagctaatgatgatgattgtgccatctgttgggatgcc
atgttgacagcacgcaaactaccctgtggccatctctttcacaactcatgtttgcgctca
tggcttgagcaggacacctcgtgtccaacatgtcggacatccctgaacattaatgcggat
ggaggccaggcgaggggccagcagcagggtgggggcttggaagaaaacattggcccagca
ggggctgctccagatgctataccacatatcaaccaacacaatcacttcttccactttgat
ggatctcgcattgccagctggctgcccagtttctcagtggaagtaatgcacaccaccaat
atcttgggcattgctcaggccaacaactcccagctcatggccatggcccatcagatccag
gagatgttccctcaggtgccatcatacctggtgatgcaggatctgcagttgacccgctct
gtagaggtcaccactgacaacatcctggagggacgcatccaggtgcctttcccgacgcag
gccatagaacgtgcccctacgcaggcgaacactgcgccaggtgaccaacaagggtccagt
ggagcagctgagcagggcttcagtgagtcagacagcatggaggtcagaggaggtcgcttc
tctaagtcggctgaggagagacagaagatgttaaagcagaggaaagaagagatgattctg
caggcacgcaggagatatctgaacaatagcccagaggacctggatgaggacttgcctgga
ctggaggaggacattgttcctgacttgaacttgactgtgctgaggcgtagaaccatggcg
gccgctgcagagagacgcatgcaaactcaacaagaccctgcaccttga
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