KEGG   Cyclopterus lumpus (lumpfish): 117749049
Entry
117749049         CDS       T09199                                 
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b
  KO
K06236  collagen type I alpha
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04510  Focal adhesion
clum04512  ECM-receptor interaction
clum04518  Integrin signaling
clum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117749049 (col1a1b)
   04518 Integrin signaling
    117749049 (col1a1b)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117749049 (col1a1b)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117749049 (col1a1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:clum00536]
    117749049 (col1a1b)
Glycosaminoglycan binding proteins [BR:clum00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117749049 (col1a1b)
SSDB
Motif
Pfam: Collagen COLFI VWC VWC2L_2nd TILa
Other DBs
NCBI-GeneID: 117749049
NCBI-ProteinID: XP_034415142
LinkDB
Position
19:complement(15597744..15614045)
AA seq 1451 aa
MFSFVDIRLALLLSATVLLARGQGEDDSTFGSCTLDGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCADPIIPDGECCPICPDLDGPQVPEEFERTTGAVGPKGDKGPAGPSG
NDGLDGQPGFPGLPGPPGPPGLGGNFSPQMSYVDHSKSSGGPAQPGPMGPMGSRGAPGSP
GSSGPQGFNGPPGEPGEPGASGAMGSRGPSGPVGKNGDDGEPGKPGRPGERGAAGPQGAR
GFPGTAGLPGIKGHRGFSGLDGSKGDAGPAGPKGESGSSGENGIAGAMGSRGLPGERGRP
GPPGASGARGNDGNSGAAGPPGPTGPSGSPGFPGGAGAKGETGVAGGRGNEGPQGARGEA
GNPGPSGAAGAVGAPGSDGSAGAKGSPGLTGISGAPGFPGSRGPAGAQGAVGAPGPKGNN
GDHGLPGSKGEPGIKGETGPAGVQGLPGNSGEEGKRGGRGEPGGAGARGPTGERGGPGAR
GFPGADGSAGGKGGPGERGANGAAGAQGATGEAGSSGAPGAPGSKGMTGSPGSPGSDGKP
GPAGATGQDGRAGAAGSTGSRGQPGVMGFPGPKGVTGESGKPGERGPSGATGAVGSAGKD
GDVGAPGSSGVAGPSGEKGEPGSTGPSGFQGLPGPQGATGETGKPGDQGSPGESGPSGPS
GARGDRGFPGERGGNGVAGPTGSRGSPGPAGNDGAKGEPGAGGAPGGQGSPGMQGMPGER
GSGGLPGVKGERGDVGAKGGEGGLGKDGARGLTGAIGVPGPHGAQGEKGEGGSVGVAGPT
GPRGSSGERGETGPSGPAGFAGSPGADGQPGAKGESGDSGPKGDAGAPGPSGPVGGSGPQ
GPAGPSGPKGTRGGAGPPGATGFPGPAGRVGPPGPSGTGGAPGAIGPVGKDGARGGRGES
GIAGRPGEVGAAGPPGVSGEKGSAGPDGAPGTSGSSGPQGISGQRGIVGLPGQRGERGFP
GLPGPSGEPGKQGASGPLGSRGPPGPAGPPGLTGASGESGREGSTGNDGSPGRDGATGPK
GNRGENGMSGPPGPPGAPGAPGTAGPSGKTGDRGESGNAGNAGPAGPAGVRGPAGPAGAK
GDRGEAGEAGERGHKGHRGFTGMQGLPGTSGGSGERGPSGASGPAGPRGPSGSNGSPGKE
GMNGLPGPIGPPGPRGRNGEMGPSGPPGPPGNAGPPGPPGGGFDFVSQPIQEKAPDPFRG
GHYRADDPNMMRDRDMEVDTTLKTLTLSVEKIRSPDGTKKSPVRMCRDLKMAHPELKSDL
YWVDPNEGSSLDAIRVHCNMETGETCVYPSESSIPMKNWYLSKNIRQKKNVWFSESMTGG
FQFQYGSEGADVEDVNIQMTFMRLMSNQASQNMTYHCKNSIAYMDSASGNLKKAVLLQGS
NDVEIRAEGNSRFTYSVSEDGCTSHTGSWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQE
FGVEVGPVCFL
NT seq 4356 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatattcggttagcgctgttgctgagcgcaacagtgcttttggca
agaggtcaaggagaggatgatagcacattcggcagctgcacattagacggacagttgtac
aacgacaaggatgtatggaaaccagagccctgccagatctgcgtctgcgacagcgggacc
gtcatgtgcgacgaggtgatctgcgaggacacgtccgactgcgccgatcccatcatccca
gacggagagtgctgccccatctgccccgacctcgatggaccccaggttccagaagagttt
gagcgaacaacaggagccgttggccccaagggagacaagggtcctgctggtccttccggc
aacgatggactggatggacagcctggtttccccggccttcccggcccccctggcccccct
ggccttggcggaaacttctctcctcagatgagctacgtcgaccactccaaatccagcggc
ggcccagctcagcctggcccaatgggtcccatgggttctcgtggtgctcctggatcccct
ggctcctctggtcctcagggtttcaacggaccccccggtgagcccggtgagcccggagcc
tctggtgctatgggatctcgtggtccctctggtcccgttggaaagaacggagatgatggt
gagcccggcaaacctggtcgccccggtgagcgtggagccgctggccctcagggagctcgt
ggattcccaggaaccgccggactccccggcatcaagggacacagaggattcagcggtctg
gatggatctaagggagacgctggacccgctggacccaagggagagtctggttcatctggt
gagaacggtatcgccggcgccatgggttctcgtggtcttcccggtgagagaggtcgccca
ggacctcccggcgcttcaggtgctcgtggtaacgatggcaacagtggcgccgctggaccc
cctggacctaccggaccttccgggtcccctggattccccggtggtgctggtgctaaagga
gagactggtgttgcaggaggccgtggaaacgagggaccccagggagcccgtggagaggct
ggtaacccaggaccctctggagccgctggtgctgttggtgctcccggatccgatggctcc
gccggtgctaagggttctcctggtcttactggtatttctggcgctcctggtttccccgga
tctcgtggtcccgctggagctcagggagctgttggtgctcctggtcccaagggtaacaat
ggtgatcatggacttcctggttctaagggagagcctggtatcaagggagagactggtccc
gctggagttcagggacttcccggcaactctggcgaggagggcaagagaggaggccgtgga
gagcccggcggtgctggagcccgtggacccactggagagcgcggcggccctggtgctcgc
ggtttccctggtgctgatggaagtgctggtggcaagggaggccccggcgagcgtggtgcc
aatggagcagcaggagctcagggagcgaccggtgaggccggaagctccggtgctcctggc
gcacctggatccaagggtatgactggtagccccggtagccccggatccgatggaaaacca
ggacccgctggtgccactggacaagatggacgcgccggagccgctggctctactggatcc
agaggacagcccggagttatgggattccccggccccaaaggagtcactggtgagtctggt
aagcccggcgagagaggtcccagtggtgctaccggcgctgttggctctgctggcaaagac
ggtgatgtcggtgctcccggatcttccggtgttgctggacccagcggagagaagggagag
cccggatccaccggaccttccggattccagggccttcccggaccccaaggtgctactggt
gagactggcaagcctggtgatcagggctctcctggtgagtctggaccttctggcccatct
ggagcaagaggagacagaggtttccccggtgagcgcggtggaaacggagttgccggccca
actggaagccgcgggtctcccggccctgctggtaacgatggagccaagggagagcctggt
gctggtggtgcccccggtggtcaaggatcccccggtatgcagggaatgcctggtgagcgt
ggatctggtggtctgcccggtgtcaagggagagagaggtgatgttggagccaagggaggt
gagggcggcctcggcaaagatggcgcacgtggtctgactggcgctatcggagtccccggc
ccccatggtgctcagggtgagaagggtgagggtggttccgttggagttgctggacccact
ggtcctcgtggttcctctggcgagcgtggagagaccggaccctctggacctgctggattc
gctggatctcctggtgctgatggtcagcctggtgccaagggagagtctggtgactctgga
cccaagggagacgctggtgctcctggaccctccggacccgttggaggctctggccctcag
ggacctgctggcccctccggacctaaaggtacccgtggtggtgctggaccccctggtgct
actggtttccctggacctgccggcagagttggaccccccggcccatctggaactggcgga
gcccctggcgccattggacccgtcggcaaagacggagcaagaggaggccgtggtgagtct
ggtatcgccggtcgccccggtgaggttggcgccgccggacccccaggagtctctggagag
aagggatccgctggccctgacggagcacctggtacctctggttcctccggaccccaaggt
atttctggacagcgtggtattgtcggtctccctggacagcgtggagagcgtggtttcccc
ggtctgcctggaccatctggtgagcctggaaagcagggagcctctggacctctcggaagc
cgtggaccccccggacctgctggaccccctggactgaccggtgcttccggagagtctggt
cgtgagggatctaccggtaacgatggctcccccggtcgcgatggagccactggccccaag
ggaaaccgtggtgagaatggtatgtctggaccccctggacctcctggtgctcctggagcc
cccggaactgccggaccctctggcaagactggtgaccgtggagagtctggtaacgctggc
aatgctggtcccgctggccctgctggcgtccgtggtcccgctggccctgctggtgcaaag
ggagacagaggagaggccggtgaggctggagagagaggacacaagggacacagaggattc
actggaatgcagggtctgcccggtaccagtggaggctctggagagagaggaccttccggt
gcatccggacctgctggacctagaggaccttctggatcaaatggctcccctggtaaggag
ggcatgaacggtctgcctggacccatcggaccccctggacctcgtggtcgcaatggagag
atgggaccttccggtcctcccggcccccctggtaacgctggaccccccggaccccccggc
ggcggattcgacttcgtcagccagcccattcaggagaaggcacccgatcccttccgtggc
ggccactaccgcgccgacgaccccaacatgatgcgcgatcgcgacatggaggtcgacacc
accctcaagaccctgactctgagcgtcgagaagatccgcagccccgacggtaccaagaag
agcccagtccgcatgtgccgtgacctgaagatggcccaccccgagttgaagagcgacctg
tactgggttgaccccaacgagggctcctctctggatgccatcagagtccactgcaacatg
gagaccggcgagacttgcgtctaccccagcgagtccagcatccccatgaagaactggtac
ctcagcaagaacatcagacagaagaagaacgtgtggttcagcgagtccatgaccggtgga
ttccagttccagtacggcagcgagggcgctgacgtcgaggacgtcaacatccagatgacc
ttcatgcgcctgatgtccaaccaggcctctcagaacatgacataccactgcaagaacagc
atcgcctacatggactccgccagcggcaacctgaagaaggccgtgctcctccagggatcc
aacgacgtcgagatcagagccgagggcaacagccgcttcacatacagcgtcagcgaggat
ggctgcacgtcacacactggctcatggggcaagacagtcatcgactacaagacatcaaaa
acatcccgcctgcccatcattgacattgctcctatggatgttggtgcacctgatcaggaa
tttggcgtcgaagttggccctgtttgcttcttgtaa

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