KEGG   Cyclopterus lumpus (lumpfish): 117749174
Entry
117749174         CDS       T09199                                 
Symbol
ift140
Name
(RefSeq) LOW QUALITY PROTEIN: intraflagellar transport protein 140 homolog
  KO
K19672  intraflagellar transport protein 140
Organism
clum  Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:clum00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:clum03037]
    117749174 (ift140)
Cilium and associated proteins [BR:clum03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   117749174 (ift140)
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd TPR_IF140_C WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD40_Prp19 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 WDR55 TPR_IFT80_172 ANAPC4_WD40 TPR_GEMI5 TPR_COPA_B Beta-prop_WDR35_TULP_N Beta-prop_CAF1B_HIR1 Beta-prop_ELP1_2nd WD40_MABP1-WDR62_1st Consortin_N RNase_HII tRNA_int_end_N2 Cys_Knot_tox TPR_12
Other DBs
NCBI-GeneID: 117749174
NCBI-ProteinID: XP_034415296
LinkDB
Position
19:8443923..8465895
AA seq 1456 aa
MLFKDRSSGDMAVYFDHRIEAPESSNVPSQLTWHSALPVLAVASSSPTTGNVDLYLQQGE
YVHSCHLEQPHQPTVLRWHPIKPVLALGWENGEVVLLTHPSGDQTVLPSTHAACITLLEW
SSSGSRLVTGDQTGALAVWKMDARGRLQGNHLVKHEYNKPLTCCIFRPASPGDDVAMLAR
ASVSGDESALDMFSWKGAPLKMGPQEGLAFYVSTADGKVHSVDEQCKTSTLLSVEGAIKK
LLYLEKREVLAVVTETLMLSQYTLGPEGGAQEFMKVKLSSKTGQNVDIVWTENGLLITAT
GEQVIRLWDLDGDDNYVLPLNETLGFERGEVINCVAYCAAKAILAAGTSHGRIAMWKMVV
QPDGNRGDTKAQWKLQTPTEIEGNVIQLQWGSSLNLLAANNSNTVRILCEHVMSAHFSQQ
VAAVQLTPTQLSVTLFTTGVHLALQSDMHIKGVCVTKDSVTVWSGKQVTVYELSGTTLRN
TGSFPCDSHVVAVHGENLYTVEPNRVQIRTPQGTVKQLLTFSKAEGNPVLLSVCQSYLVI
GTDTAHIRVFDLSRRDAKAHCSAKNLADQIANLGSPEVSQCNANGSQVSILITQVNGRPD
HKVYFYDVEMDTVAHFDFFVGRPSSGISQSEESERQQFQGTELPGRCPVSHFWDESEPRL
FVCETVPISSESSSTSFLDTTDVLVVTLFCTQEHGLLLQDCYPKPSGLQALLALDVPYYY
FSCKPGESDPAVISAPTPAPPQQNQPSSGSAAQFPHMVSRRALRDFVGLENCEKATRDAM
LNFSFYLTIGNMDEAFKSIKLIKSKAVWENMARMCGKTRQLDVARVCLGNMGNARAAKAL
KEAEIEPEPEAQVAMLAIQLGMLEDAESCIKCCQRYDLLNYFYQASSQWQQALETAENHD
RIHLRTTYYNYAKYLESYGDKTLALAYYEKSDTHRVEVPRMLQDDTPSLEIYVNKMKDKN
IYKWWAQYLESQSDMDSALCFYESAQDYLSLVRVHCYMGNIQKASEIANDTGDRAASYHL
ARHYEGHDDIKQAVHFYTRAQAYNNAIRLCKETGLDDQLMNLALLSNAEDMMEAACYYEE
KGTHMDRAVALYHKAGYVSKALELAFATQQFSALQLIAEDLNEHSXPALLARCSDFFITH
XQYEKAVELLVAAKKYHEALELCVTQSLTITEELAERMIVTDSKDLSEDARKELLERIAD
CCMRQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFASVCRQKELFIMAANYLQSL
DWRKNPEILKTIIGFYTKGRAPDLLAGFYEACAQVEIDDYQNYEKALDALTEAFKCLSKA
KDTSTGQQEVKLADLQHRVTLIKMFVHARRLYTEDPGEAVRLCESLLEEPELDPAVRIGD
AFGFLVEHHCQQGNFQVAYRKLEEPPEASAIQNVRYYVSQASLQSLQKEMGVSMDRGDSR
RNVKEEDEVEEDLTVS
NT seq 4371 nt   +upstreamnt  +downstreamnt
atgctatttaaggacaggagcagtggggacatggcggtgtattttgaccaccgtattgag
gcccctgaaagcagcaatgtgccctctcagttgacctggcactcagctcttcctgtactg
gctgtggcctcaagcagccccaccactggcaatgtagacctctacctgcagcagggagag
tatgtgcatagctgccatttagaacaacctcaccagcccacagtgctgcgctggcatccc
ataaagcctgtgttggcactcggctgggagaatggagaggtagtgctgcttacacacccc
tctggagatcaaacagtccttcccagcacacatgcagcctgcatcacactgctggagtgg
agtagctctggcagccgcttagtaactggcgatcagactggagcactagcagtctggaag
atggatgctagagggagacttcaaggaaaccatcttgtgaagcatgagtacaacaaacct
ctaacttgctgcatcttcagaccggcctcgcctggggacgatgtggcaatgctagcccgg
gcttcagttagtggagatgagagtgctctggacatgttcagctggaagggagcacctctc
aagatgggcccacaggagggacttgcattctacgtcagcactgcagatggtaaggtccac
agtgtggatgagcagtgtaagaccagcacacttctcagtgtggagggcgccatcaagaaa
ctgctctatcttgagaaaagagaggtacttgctgtggtcacagagaccctgatgttgtca
cagtacactcttggaccagagggaggagcccaggaatttatgaaggtgaagttgagcagc
aagactgggcagaatgtagacattgtctggacagagaacggcctccttatcacagcaacc
ggagaacaggttatcaggctgtgggacctggacggagacgataactatgtgttgcccctc
aacgagactctgggctttgagagaggagaggtgatcaactgtgttgcatattgtgcagca
aaagcaatcttggcagctggtaccagccatggccgcatagcaatgtggaagatggtggtg
cagccagacggcaacagaggtgataccaaggcccagtggaagctacagacacccacagaa
atagagggaaatgtcattcagctacagtggggctcgagcctgaatctgctggcggccaac
aattcgaacacagtgcggattctgtgtgagcatgtgatgtcagcccatttcagccagcag
gtggcagcagtgcagctcaccccaacccagctcagtgtcactctgttcaccacaggagtg
caccttgctctgcagtctgacatgcatatcaaaggagtttgtgttactaaggattcagtg
acagtctggagtggcaagcaggtcactgtgtatgagctctcagggacaactcttcgcaat
acaggatcgtttccttgtgactcccatgtcgtagccgtacatggtgagaacctctacacg
gtggaacctaacagggttcagattcgtacgccacagggcaccgtgaagcaactgctgacc
ttttccaaggcagagggcaatcctgtactacttagtgtgtgtcagtcttacctggtgatc
ggcacagacacagcacacatcagagtatttgacctctcacgaagagatgccaaagctcac
tgcagtgcgaagaacctggctgaccagattgctaatctggggagccctgaagtcagtcag
tgtaacgccaacggcagccaagtcagcatcctaatcactcaggttaatgggcgcccagat
cacaaagtgtacttttatgacgttgagatggacactgtggcacactttgacttctttgtt
ggcagaccgtccagcggtatctcacagtcagaggaaagtgaaaggcagcagtttcagggg
acagagctccctggtcgctgccctgtatctcacttctgggatgagagtgaacctcgtctt
tttgtttgtgagactgtgccgatcagttctgaatcctcatcaactagtttcttggatacg
actgacgtgttggtagtgacactcttctgtacgcaggagcatgggctcctcctacaggac
tgctaccctaaaccttcaggcctgcaggcgctcctcgctctggacgtgccctactattat
ttcagctgcaagcctggtgagagcgatccagcagtgatttcagccccaacaccagcacct
ccacagcagaaccagccatcaagcggttctgctgcccagttcccccatatggtgtccagg
cgagctctcagagactttgtgggcctggagaactgtgagaaggcaactcgcgacgccatg
ctcaacttcagcttttacctgaccatcggcaatatggacgaagccttcaaatctatcaag
ctcatcaagagtaaagcggtttgggaaaacatggcacggatgtgtggtaaaacccgccag
ctggatgtggcacgcgtgtgccttgggaatatgggaaatgcgagggcagcaaaagcactg
aaggaggcggagattgagcccgagccagaagcccaagtggcgatgttggcaattcagctc
ggaatgctggaagatgcagaaagttgtatcaagtgctgtcaacgctatgacctgctgaac
tatttctaccaggcgtctagccaatggcagcaagctttggaaacagcagagaaccacgat
cgcatccatctgcgcaccacctattacaattatgccaaatacctggagtcctatggcgac
aagacactggccctcgcatattatgagaaatcagacacacacagggtggaagtgcccaga
atgctccaggatgacacgccatctttagagatctacgttaacaaaatgaaagacaagaac
atctataagtggtgggcccagtacctggagagccagtcagacatggattcagcgctgtgt
ttctatgaaagtgctcaagattacctctctctggttcgagtccactgctacatggggaac
attcagaaggcatcagagatagccaatgacacaggtgacagagcagcgtcataccacttg
gctagacactatgagggccatgatgacatcaaacaggccgtccacttctacacacgagcc
caggcctacaacaacgccatacgactttgtaaggagaccggtctggatgaccagctgatg
aacctggctctgcttagtaacgcagaggacatgatggaggctgcctgctactacgaggag
aaaggcacccacatggaccgagctgtcgcactctatcacaaggctggttacgtctccaaa
gctctggagttggccttcgccacccagcagttctctgcacttcaattgatcgctgaggat
ctgaacgagcactctngaccagccttgctggcacgctgctccgacttcttcatcactcac
ntccagtatgaaaaggcagtggagttactggtagcagccaagaagtaccacgaagccctg
gagttgtgtgtgacccagagcttgaccatcacagaggagctggcagagagaatgattgta
actgattcaaaagacttgtctgaagatgcccgaaaggagctgctggagaggatagcggac
tgctgcatgcgtcagggcaattaccacctggccactaagaaatacacacaggcgggcaac
aagctgaaggccatgagggcactcctcaagtctggcgacacagagaagatagtcttcttc
gccagtgtttgtcgtcagaaggagcttttcatcatggccgccaactacctccagtctctg
gactggcgcaaaaatccagagatcttgaagacaatcattggtttctacactaaaggccgg
gcaccagacctgctggctggcttctatgaagcctgtgcacaggtggagattgatgattac
cagaactatgaaaaagctctagatgctttgactgaggcgttcaagtgcctctccaaagca
aaggacacttccactggacaacaggaagtaaagctagctgacctgcagcatagagtaacg
ctgatcaagatgtttgtccacgcccgccgcttgtacacggaggatcctggtgaggcggtg
cggttatgtgaatccttgctggaggagccggagttggaccctgctgtcaggattggagat
gcatttggttttctggtggagcaccactgtcagcaaggcaacttccaagtggcctaccgt
aagctggaggagcctccagaagcttctgccatccagaacgtcaggtactatgttagccag
gccagccttcagtcactgcaaaaagaaatgggtgtgtccatggatcgtggtgacagcagg
cgcaatgtgaaggaggaggatgaagtggaggaggacttaactgtatcctaa

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