Cyclopterus lumpus (lumpfish): 117749298
Help
Entry
117749298 CDS
T09199
Symbol
scrib
Name
(RefSeq) protein scribble homolog isoform X1
KO
K16175
protein scribble
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117749298 (scrib)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
LRR_8
LRR_14
PDZ_6
LRR_4
PDZ_2
LRR_1
LRR_13
LRR_LRWD1
LRR_9
Motif
Other DBs
NCBI-GeneID:
117749298
NCBI-ProteinID:
XP_034415504
Ensembl:
ENSCLMG00005009548
LinkDB
All DBs
Position
20:complement(5655598..5714298)
Genome browser
AA seq
1844 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQTVPDEVFRYSRSLEELLLDANQLKELPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNEIPEIPESIKFCKALEIADFSGNPLSRL
PDGFTQLRALAHLALNDVSLQALPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEQLD
LGSNELEVLPDTLGALPNLRELWLDRNQLSSLPPELGNLRKLVCLDVSENRLEELPSELN
GLLALTDLLLTQNLLEVIPDSIGSLKQLSILKVDQNRLTDLTDSIGECENLTELVLTENL
LQSLPRSLGKLKKLTNLNVDRNRLGGVPKELGGCASLNVLSLRDNHLGKLPAELADATEL
HVLDVAGNRLQNLPFALTNLNLKAMWLAENQSQPMLKFQTEDDESTGEKVLTCYLLPQQP
SPSLENLLQNSVDDSWTDSNLNRVSVIQFQEETKAEEEDDEAAAERRGLQRRATPHPNEL
KVMKKVIEERRNEAYTSRPDGEEESPDQQEKRLSDLSNQSHNSQVSNSTLSATSHEDRRN
VTAASQREDLVDGHYPQDEEELDEMEVEYIEPSVHFAEEPMIRGLDEDDDEVGVDGERSD
EEERPAIPAEKQRLIRKDTPHYKKHFKINKLPKPEAVAALLQGFNPDGMNSPTQVARDQQ
DEEEEEEHILCNPQHHLRMEELEDSRLQVNSSQVKTNQNIYWQSWNVKSNDPCLCHDMGV
SFDQVNNLLIEPARIEEEEHSLTIMRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEG
PAARAGVKVGDKLLEVNAVDLHEAEHHTAVEALRSSGATVSMSVLRERMVEPENAITTTP
LRPEDDYFPRERRSSGIAFNMEAAPSEPHQRFSTCLIRNDKGLGFSIAGGKGSTAYRTAD
TGIYISRIAEGGAAHRDSTLHVGDRVISINGVDMTEARHDQAVALLTGTSPTISLLVERD
PNAPGGSPGQSRARAHSPPPPEPSDSPDQEEDGLGLHGNNLSRMEDEYPIEEVTLLKSGG
PLGLSIVGGSDHASHPFGINEPGVFISKVIPHGLACESGLRVGDRILEVNAIDLRHATHQ
EAVRALLANKQEIRMLVRRDPSPPGMQEIVIQKQPGEKLGISIRGGAKGHAGNPFDPTDE
GIFISKVSSSGAAARDSRLQVGMRILEVNNHSLLGMTHTEAVRVLRAVGDSLVMLMCDGF
DPQKMAAVEASPGIIANPFASGIVRKNSLESISSIDRDLSPEEMEIMQKESEMVRETSQW
EREEMEKVERMRLEREEATRLLEEETENIGTGPLKLDYKTLAALPTTSLQKLNRAPPSDF
TRTESPIREAPYSPTIQPHSNHSSNSSLYAGRETRFANLHYTSTPTANTDFTSSSTRPGA
IQPVGRVRQSTSPATPDGHSPNPFQHGPSPFDSQTPDLYGVRNNFHPQQPSPEPELNNEV
FDDDIDGQTGAGKGLTGSVSPLSPDRRDYMSLAAVPRLSRPSWDLQSPSPGGKYSPEQRS
FRDRQKYFEIDVKQQTPEKPKPRVSLVGEDDLKKMREEEERKFEQRAREYLLDEDEEDEE
EDLAKQVAQMKATGKVLLDGVEYNVEPVTTPSQHCATPPSYCGSSGPSSVDGKGESQRNS
LEDSLRQEQRPSSMTGLIPAYTGDSATPIRTAKAERRHQERLRMQSPELAVAPDKDLSPA
EKRALEADKRAMWRAARMKSLEQDALKAQMVIAKSRDGKKRGTLDQLTESPSPAPTPSPT
PMEELSPRGVTSPGRLSLSSKKFDYRQFAAIPSSKPVYDIQTPEAVDDLQFIDDGSSNPV
PDASPEVEVPTPLPATSALEEMALYSNKRKLRQGRRSLETAVPT
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccccctgtggcggtgcaaccgccacgtcgagtcggtggacaagcga
cattgcaacttgcagacagtccccgatgaggtattccgctacagccgcagcttggaggag
cttctcctcgatgccaaccaactcaaagagctgccaaagcctttcttcagactactgaac
ctacggaagctcggcctcagtgacaatgagatccagaggctccctcctgaggtggccaac
ttcatgcagctggtggagctcgacatttccagaaatgaaattcccgaaatcccagagagc
attaagttttgcaaggccttggagatcgcagacttcagtggaaacccactgtccagattg
ccggatggcttcactcagctccgagcgttggctcacttggcactcaacgacgtgtcattg
caggcgttgcccaacgacattggaaatctggccaacctggtgacgttagagctcagggag
aacctgctgaagtctctgccaacgtcgctctctttcctggtgaaactggaacagctggac
ctgggcagcaatgaactggaagttttgccggacaccctcggtgctctccccaacctgagg
gagctatggctggaccgtaaccagttgtcctcattaccaccagagctgggaaacctccgg
aaactggtgtgtctggatgtgtctgagaatcgtctggaggagcttccctcagagctcaac
ggcctcctggctctcaccgacctgctgctcacgcaaaacctgctggaggtcatcccagac
agcataggctctctgaaacagctgtccatcttgaaggtggaccagaatagactgaccgac
ctgactgattcaataggcgagtgtgaaaacctcacagaactcgtcttgactgagaacctt
ttacagtcacttcctcgctcgctgggcaagctgaagaagctgaccaacctgaatgtagac
cgcaaccgtttgggcggcgtgcccaaagagctgggcggctgtgccagcctcaacgttctc
tcactgagagacaatcacctgggcaaactgcccgcggagcttgcagatgccactgagctg
catgtgctcgatgtggccggaaacagattacaaaacctgccttttgccctcacaaacctc
aacctaaaggccatgtggcttgcagagaaccagtcgcagccaatgctcaagttccagaca
gaggatgatgagagcacaggggagaaggtgctgacctgctatttactgccccagcagcct
tctccaagccttgagaacttgctgcaaaacagtgtggatgacagttggacggacagcaac
ctgaaccgagtgtcagtcattcaattccaggaagagaccaaggccgaggaggaagatgac
gaggctgctgcggagcgcagaggccttcagcgcagagccactccacaccctaatgagctg
aaggtgatgaagaaggtgattgaggagaggaggaatgaagcttacacatccagacctgat
ggagaagaagagtcccctgatcaacaggagaaacggctcagtgacctctccaatcagagc
cataactcccaggtgtccaacagcacactgtcggccacttcccacgaggacagacgaaat
gtgactgcagcctcgcagagggaggaccttgtagacggccactaccctcaggatgaagaa
gagctggatgagatggaggtggaatacattgagccctctgtgcactttgcagaggagccc
atgatccgtggtttggatgaggacgacgatgaggtcggggtggatggcgagaggagtgac
gaggaagagaggccggctatccctgcggagaagcagcgtctgatcagaaaagacacgccg
cactacaagaagcacttcaagatcaacaagctgcccaaaccagaggccgtggctgcgctg
ctgcagggcttcaatcccgacggcatgaactctccgacacaggttgctcgggaccagcag
gacgaagaggaagaggaagagcacattttatgcaaccctcaacaccatcttagaatggag
gagctcgaagacagccggctccaggtcaactccagccaagtaaagaccaaccagaacata
tattggcagagctggaatgtgaaatccaacgatccttgtttgtgtcatgacatgggggtg
tcatttgatcaagtcaataatctgctgattgaacctgctcgaattgaggaggaagagcac
tccctgaccatcatgcgacaaactggcggcctgggaatcagcattgctggagggaaagga
tccacaccttacaagggggatgatgagggaatcttcatctccagagtatctgaagaaggt
cctgcagccagagcaggtgtgaaagtgggagacaaactcctggaggtgaatgcagtggac
ctccacgaagcagaacatcacacagcggttgaagctcttcgtagctccggtgccacagtt
tccatgtcggtgctgcgggagcgaatggtggagccggagaacgccatcacgaccacgccg
ctgaggccagaggacgactacttcccgcgggagagacggagcagcggcatcgccttcaac
atggaggcggctcccagcgagcctcaccagcggttctccacctgcctgatccgaaacgac
aagggccttggattcagcatcgccgggggcaaaggctccacggcctaccgcacagcagac
acgggaatctacatctctcggattgcagaagggggagcggcacacagagacagcacactg
cacgtaggcgacagggtgatctctatcaatggtgtagacatgacagaggccaggcatgac
caggcagtagcgctccttaccggcacctcacccaccatctccctcctggtggagcgagac
ccgaatgcaccagggggctctccaggtcaatcccgggcgcgagcccactcccctccaccc
ccagagccctcagattcaccggaccaggaggaggacggtctcggccttcatgggaacaac
ctgagtcggatggaggacgagtatcccatcgaggaagtaaccctgctgaagtctggtggc
cctctaggcctcagcatcgtgggaggcagtgatcacgccagtcacccgttcggcatcaat
gagcctggcgtgttcatctcaaaggtgattcctcacggtctggcatgtgaaagcggactg
cgtgtcggcgaccgcattttagaagtgaacgccatcgacctgcgccacgctacgcaccag
gaagctgtgcgagcgctgctggccaacaagcaggagatccgtatgttagtgcggcgggac
ccgtcgcctcctgggatgcaggaaattgtgatccagaagcagccaggggagaagcttggt
atcagtattcgtggaggggccaagggtcacgcaggaaacccctttgaccccacagacgag
ggcatcttcatctctaaggtgagctcgagcggtgcagcagccagagacagccgcctgcag
gttggcatgcgtatcctggaggtgaacaaccacagcctgctggggatgacgcacacagag
gccgtgcgagtgcttcgagctgtcggagactctctggtcatgctgatgtgtgacggcttc
gacccacaaaaaatggctgccgtggaggcgtctcccggcatcatcgccaacccatttgct
tcaggcatcgtccgtaagaacagtctggaaagcatctcttctatcgaccgagacctgagc
ccagaggagatggaaatcatgcagaaggagtctgagatggtgagagagacatcgcagtgg
gagcgagaagagatggagaaagtggagcgtatgcgtttggagcgcgaggaggcaactcgc
ctgctagaagaggagactgagaacattggaactggacctttaaaacttgactataaaacc
ctggcggctctgcccaccaccagtctgcagaagcttaaccgggcacctccttctgatttt
acccggactgagagcccaatcagagaagcaccctactctcccacgatccaaccgcacagc
aaccactcctccaacagctccctgtatgcaggcagggagacccgcttcgcaaaccttcat
tacacctccactcctaccgccaacactgacttcacttcttcatcaactcgaccgggtgcc
atccagcccgtcgggcgcgtgcggcagagtacctcccccgccacgccggacggccacagt
cctaacccattccagcatggcccctcccccttcgactctcagacccctgacctgtatggc
gtgaggaacaatttccacccacagcaaccttctccagagcctgagttgaacaacgaggtg
tttgatgatgacatagacggtcagacgggagctggtaagggtctgaccggcagtgtctcc
cccctctcacctgaccgtcgggattacatgagcctggcagcagtgcctcgcctctccagg
ccttcctgggacctgcagagtccatctcctggtggtaagtacagcccagagcagcgctcc
ttcagggacaggcagaagtactttgagattgacgtgaagcagcagacgccagagaaacca
aaacctcgtgtgtctctcgttggagaagatgacctcaagaaaatgagggaggaagaagag
aggaagttcgagcagcgggcgcgggagtacctgctggatgaggacgaggaggatgaggaa
gaggacctggctaagcaggtggcacagatgaaggcaactggcaaagtgttgctggatgga
gtggagtacaacgtggagccggtaactaccccgtcgcagcactgcgccacgccgccgagc
tactgcggcagctccgggccttcctctgttgacgggaagggggagtctcagaggaattcc
ctggaggacagcttgaggcaggagcagaggcccagctccatgactggtctgatcccggcg
tacaccggagactcggcgactcccatccgcacagccaaagcagagcgccgacatcaagag
cgactccgtatgcagagccccgagctggctgtggcccccgacaaggacctgtcccctgcg
gagaaacgagctctggaggccgacaagagagccatgtggagggcagcacgaatgaagtct
ctcgagcaagatgcactgaaagcacagatggtcatcgccaagtctcgcgacggaaagaag
cgcggcacgctggaccagctgacggagtcgccgtcgcccgcccccacgccctctcccacg
cccatggaagagctcagtcctcgaggagtgacctctccaggacggctgtccctgtcgtca
aagaagtttgactaccgacagtttgctgccattccttcttccaaacccgtatacgacatc
cagaccccagaagctgtggatgacctgcagttcatcgacgacggctccagcaacccagtg
cccgatgcaagccctgaggtcgaggtgcccaccccactgcccgccacctccgctctggag
gagatggccctgtacagcaacaagcgcaaactgaggcagggccgccgcagcctggagacc
gccgtgcccacgtaa
DBGET
integrated database retrieval system
