Cyclopterus lumpus (lumpfish): 117749337
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Entry
117749337 CDS
T09199
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117749337 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117749337 (cstf3)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117749337 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_6
TPR_19
Motif
Other DBs
NCBI-GeneID:
117749337
NCBI-ProteinID:
XP_034415623
Ensembl:
ENSCLMG00005002598
UniProt:
A0A8C2YXP0
LinkDB
All DBs
Position
3:17021715..17032331
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AA seq
716 aa
AA seq
DB search
MATEGAAEQAAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVT
QFPSSGRFWKLFIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNSPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDVWYEAAQ
YLEQSSKLLAEKGDMNNSKLFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRMKYEKV
HSIYNKLLTIEDIDPTLVYIQYMKFARRAEGIKSGRTIFKKAREDLRTRHHVYVTAALME
YYCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPE
KSGEIWARFLAFESNIGDLASILKVERRRFTAFKDEYEGKETALLVDRYKFMDLYPCSSS
ELKALGYKDVSRSKMATLLPETVVTPSTPTLKDEADRKPEYPKPDTNQMIPFQPRHLAPP
GLHPVPGGVFPVPPAAVVLMKLLPPPTCFTGPFVQVDELMETFRRCTLPETVDAAVELIT
GRQPDTGGEGNGSMENHAIAKSLKRPNADSDEEDDKGAVAPPIHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagggagcagccgaacaggcagcggcagagtatattccagagaaggtgaag
aaggcagagaagaagttggaagaaaacccatatgaccttgacgcatggagcattctgatt
cgagaagcacagaaccaacccatagataaagcaaggaagacatatgaacgacttgtcacg
cagttcccaagttctggcagattctggaaactattcattgaagccgagatcaaggctaaa
aactatgacaaggtagaaaagttgtttcagagatgcctaatgaaagtcttgcacatcgac
ctgtggaaatgttacctctcatatgttcgagagaccaaagggaagctgcccagctacaaa
gagaagatggcccaggcatatgactttgctctggataaaattggcatggaaattatgagc
tatcagatttgggtggactacatcaacttcctcaaaggagttgaggctgtgggctcatac
gcagagaaccaacgaatcactgcagtacggagggtgtaccagagaggctgcgtaaatccc
atgatcaacattgagcagctctggagagattatagtaaatatgaggagggaatcaatgtg
cacttggccaaaaagatgattgaggatcgaagtagggactacatgaatgccaggagagtg
gcaaaggagtacgagactgtgatgaaggggttggacaggaatgcaccctcagtaccgccc
cagaactccccccaggaagcccagcaagtggacatgtggaagaagtacatccagtgggag
aaaagcaacccactgcgcacagaagaccagaccctcatcacaaagagagtgatgtttgcc
tatgagcagtgcctgctggtgctgggccaccatcctgacgtctggtacgaggcagcacag
tacctggagcagtccagcaaactgctggcagagaaaggggatatgaataattctaagctg
tttagtgacgaggcagcgaacatctatgaacgtgccattgggactcttcttaagaagaac
atgctgctgtacttttcattcgcagactatgaagaaagtcgcatgaagtacgagaaggtc
cacagcatctataataaactgcttaccattgaggacatcgaccccacactggtctacatt
cagtacatgaagtttgccaggagggcagaaggcatcaagtcgggtcgtaccatcttcaaa
aaggcccgagaggatctacgcacgcgtcaccatgtgtatgtgacagcagcactgatggag
tactactgcagcaaggataaatcggtggcctttaagatttttgagcttggtttgaaaaaa
tacggcgatattccagagtacatactggcatacattgattacctctcccaccttaatgag
gataacaacaccagggttctgtttgaacgtgtcctcacctcaggaagcttgtcaccagaa
aagtcaggcgagatctgggctcgattcctggcttttgagagcaacataggagacctggcc
agtatcctgaaagtggagcgcaggcgattcactgccttcaaggacgagtatgagggcaag
gaaacagccttgcttgtagatcgatataagttcatggacctgtatccctgctcttctagt
gaactcaaggcccttggatacaaggatgtgtctcggtccaaaatggcaacactgctccca
gagactgtggtgacgccctccacgcctacactaaaggatgaagctgaccgtaaacccgag
taccccaaacccgacactaatcagatgatccccttccaaccacgtcaccttgcccctcca
ggtttacaccctgtccctggtggagttttcccagtccccccagctgctgttgtcctaatg
aagctgctccctccgcctacgtgcttcactggaccctttgttcaagtggatgagctcatg
gaaacattcaggagatgcacacttcctgagactgttgatgctgctgtcgagctgatcact
ggcagacagcccgataccggaggggaaggcaatggatccatggagaaccacgcgatcgcc
aagtcactcaagaggcctaacgcagattccgacgaggaggacgacaaaggagctgtggct
ccgcccatacatgacatctaccgtgcacgccaacagaaaaggatccgataa
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