Cyclopterus lumpus (lumpfish): 117749362
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Entry
117749362 CDS
T09199
Name
(RefSeq) polypyrimidine tract-binding protein 2-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117749362
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117749362
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
GlcNAc-1_reg
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
117749362
NCBI-ProteinID:
XP_034415682
Ensembl:
ENSCLMG00005018936
LinkDB
All DBs
Position
20:18117566..18131292
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AA seq
518 aa
AA seq
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MDGISDVAVGVKRGSDELSMYSTPNSGVSSISDGASNGSDSKKLRVEEAPPSRVLHIRKL
PNEASETEVIALGLPFGKVTNILTLKGKNQAFLEMGTEEAAITMVNYYTTVNPHIRNVPV
FIQYSNHKELKTDAGNQRTQAVLQAVSAVQSGGSPSSDVQEALAAASSPVLRIIIDNMFY
PVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLALDGQNIYNSCCTL
RIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPSLDSTVAAAFSKDSNSLLGKIPGALN
PLSAAAAAAAAAGRVALAGQAGSSGVLLVSNLNEEMVAPQSLFTLFGVYGDVQRVKILYN
KKDSALIQMSDANQAQLAMSHVNGQKMYGKIIRVTLSKHQTVALPRDGLDDQGLTKDFAN
SPLHRFKKPGSKNFQNIFPPSATLHLSNVPQDVTEEDLRLLFSNAGGTVKAFKFFQDRKM
ALLQMSTVEEAIQALIDLHNYNMGGNQHLRVSFSKSTI
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggacggcatcagtgatgttgcagttggggtgaagaggggatcagacgagctgagcatg
tacagcactcccaactctggtgtgagcagtatcagtgacggagcgtccaacggcagcgac
agtaaaaagttgagggtggaggaggccccgccgtctcgcgtgctccacatccggaaactg
cccaacgaggcctcggagacggaagtcatcgccctgggtctgccttttggcaaagtcacc
aatatcctcacgctgaagggaaagaaccaggcgttcttggagatgggcacggaggaggca
gccatcaccatggtcaactactacaccactgtcaatcctcacatccgcaatgtccccgtg
tttattcagtactccaatcacaaagaactcaaaaccgatgccggcaatcagcggacccag
gcagtgcttcaggcggtgtcagcagtccagtccggcgggtcgccaagctccgacgtgcag
gaggctctcgccgcagcctccagccccgtgctgcggatcatcatcgataacatgttttac
cccgtcacgctcgacgtcctgcagcagattttctccaagttcggcacggtcatgaagata
atcacattcaccaagaacaatcagttccaggcccttctgcagttcagtgacccggtcaat
gcacagcaggccaaactggccctggatggccagaacatctacaattcatgctgcacgctg
cgcatcgacttctccaagctggtcaacctaaatgtcaagtacaacaacgacaagagtcgg
gactacacgcggcccgagctgcctgccggcgacggccagcccagcctcgactccacggtg
gccgccgccttcagcaaagactccaactccctcctcggtaagatcccaggagccctgaac
cctttgagcgcggcggcggcggctgctgctgctgcaggcagggtggcgcttgctggacag
gcggggtccagcggggtcctgctggtcagcaacctcaacgaggagatggttgcgccccaa
agtctgtttaccctcttcggagtgtacggcgatgtccagagggtgaaaatcctttacaac
aagaaggacagcgctctcattcagatgtcagacgccaaccaggcccagctagcgatgagc
cacgtgaacggccaaaagatgtacgggaagatcatccgcgtgacgctgtccaagcaccag
acggtggcgctgcctcgggacggcctggacgaccagggcctgaccaaggacttcgccaac
tccccgcttcaccgcttcaagaaaccgggctccaagaatttccagaacatcttcccgcca
tccgccaccctccacctctccaacgtcccacaagacgtgacggaggaggacctgcggctg
ctcttctcaaacgctggaggaaccgtgaaagcattcaagtttttccaggatcgtaaaatg
gctctgctccagatgtccacagtggaggaggccatccaggccctgattgaccttcacaac
tacaacatgggaggcaaccagcacctgagagtctccttctcaaagtccaccatttaa
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