Cyclopterus lumpus (lumpfish): 117749447
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Entry
117749447 CDS
T09199
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117749447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clum03036
]
117749447
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
117749447
REST complex
117749447
Heterochromatin formation proteins
Other heterochromatin formation proteins
117749447
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
117749447
NCBI-ProteinID:
XP_034415888
Ensembl:
ENSCLMG00005000885
UniProt:
A0A8C2YW38
LinkDB
All DBs
Position
3:27527887..27544934
Genome browser
AA seq
1309 aa
AA seq
DB search
MKRRVEDQEPIFAPQQQQTRRPPVQGIADGFQHRALAPAPSVIEAAADNMQPSTGIQYSL
PQGYQVPTMPQSTSGHGHGHNNAAPHVVAHAHALAVQSQGPAVVHGHVHPPAPMTSTQGQ
QFQRLKVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHP
DLIMGFNTFLPPGYKIEIQTNDLVNVTTPGQIHYITPHGISVQNIPMSAASSQPVSHNQH
QSLPQAGPHTATTAAAATTNNTTTTSTPPTPAQPAPNKTSKPIQSPAHTPTSQPNPSIPS
YASPRSPSAQSHTPVSSTPSGGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEI
LHTYQKEQRNAKEAAGNYTPSLTEQEVYTQVARLFKNQEDLLSEFGQFLPDANSTMLLGK
TTPDRAESVRNDHGGTVKRPLLTSKQRLSQNGLPIRRPPGVGAPPVKKKPKLLGKDHGMT
EVGKHSTSTETMFFEKVKKALRSSEAYDNFLRCLHIFNQEVISRAELVQLVIPFLGKFPE
LFTWFKNFLGYRESSHGESSHAESLPKERATEGIAMEIDYASCKRLGSSYRALPKSYQQP
KCTGRTPLCREVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLEANLA
TIRALETVQRRMSRMSAEEQLRFKLDNSMGGSSEVIHRKAIQRIYGDKAHDIIDGLKKNP
AVSVPIVLKRLKMKEEEWREAQRGFNKIWREQNEKYYLKSLDHQGINFKQNDTKVLRSKT
LLNEIEMLYDDRQERASEDATTPPPSGAHMTQTYDDSQILEDAAALIIHHVKRQVGIQKE
DKYKIKQIIHHFIPDMLFARRGELSDVEEDEDEEEEDEEDTDPDPDGPKKHNGLPGGSPS
KSKLLFGNAAAQKLRGGGADDAYNMFFVNNYWYIFLRLHHILCSRLLRIYGQAERQIEVD
AREREWEREVLGLKREKSENPAIQLKMKEPMDVDVEDYYSVFLEMVRNLLDGNMEPTQYE
DSLREMFTIHAYIAFTMDKLIQSIVRQLQHLVTDDVCSRVTDVYLSEGANKATGGSLSTQ
TSRAPAEGAYQRKVEQLMSDENCFKLMFVKSRGAVSLSMELLDTEEENSDEPADAERWSV
YVGRYLNSDSASPELREHLSQKPVFLPRNLRRIRRCQRGWERLQQERMNKAPSDAPRDSD
GGLKMECMFKLNSYKMVYVCKSEDYMYRHTALTRAHQSQQRVNTRLHRRFHAWLDVWAGE
HVTADMSADSREWLMGERREGLLPCSTTRSPEVLHYIGVNKYRVKYRTL
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcgcgtggaggaccaggaaccaatatttgcgccccagcaacagcaaacgcgt
cgccccccagttcaaggcattgcagacggcttccagcaccgggccctcgccccggccccc
tctgtgatcgaggcggcggcagacaacatgcagccgtccaccggcatccagtattctctt
ccccagggctaccaggtgcccacgatgccccagagcacgagtggacacggacacgggcac
aacaacgccgctcctcacgttgtcgcccacgcacacgccctggcagtgcagtcccagggc
cccgcggtggtccacggtcacgttcatccacctgcacccatgacctcgacccaaggacag
cagtttcagcgactgaaggttgaagacgccttgtcctatctggatcaagtgaagctgcag
tttgggaatcagccgcaagtttataatgacttccttgatattatgaaagagttcaaatca
cagagcatcgacactcccggagtcatcaaccgcgtctcccagctcttcaagggccaccca
gacctcatcatgggcttcaacactttcctgccgcccggatacaagattgagattcagacc
aacgacctcgtcaacgtgaccacgccgggtcagatccactacatcacgcctcacggcatc
tcggtccagaacatccctatgagcgcagcgtccagccagccggtgagccacaaccagcac
cagagtctgccgcaggccggcccgcacaccgccaccaccgccgccgccgccaccaccaac
aacacgaccaccacctccaccccgccaacccccgcccaacctgctccaaacaaaaccagc
aagccgattcagtctccggcccacacgcccaccagccagcccaacccatccatcccatcc
tacgcctcgccgcgctccccctcggcccagtcccacactcccgtgagcagcacgccgtcc
ggcgggccgcctcttcagaacaaccagcccgtggagttcaaccacgctataaactacgtc
aacaagatcaagaaccgcttccagggtcagccggacatctacaaagccttcctggaaatc
ctccacacgtaccagaaggaacaacggaacgccaaagaggcagccggcaactacacccca
tcactcaccgagcaggaggtctacactcaggtggcgagactcttcaagaaccaggaggac
ctgctgtcggagttcggacagttcctgcccgacgccaacagcacgatgctgctgggcaag
acgacgccggaccgggccgagtcggtgcgcaacgaccacggcggcacggtgaagaggcct
ctgctgaccagcaagcagaggctgagccagaacggtctgccaatcaggagaccccctgga
gtgggagcgccgcccgtcaagaaaaagcccaaactattggggaaggaccacggcatgacc
gaggtcggcaaacacagcaccagcactgaaacgatgttcttcgagaaggtgaagaaggct
ctgcggagctccgaggcgtacgacaacttcctgcggtgtcttcacattttcaaccaggaa
gtgatctctcgcgccgagctggtccagctagtcatcccgttcctcggaaaattcccggag
ctcttcacgtggtttaaaaacttcctgggctaccgggagtcgagccacggggagtcgagc
cacgccgagagtttgcccaaggagcgcgcgacagagggcatcgccatggagatcgactac
gcttcctgcaagcggctgggctccagctacagggcgctgcccaagagctaccagcagccc
aagtgcacggggaggacgccgctgtgccgagaggttctgaacgacacgtgggtctcgttt
ccatcgtggtctgaagattcgacattcgtgagctccaagaagactcaatacgaggagcac
atttaccgatgtgaggacgagcgcttcgagctggacgtggtgttggaggccaacctggcc
acgatacgagccctggagacggtgcagcggaggatgtcccgcatgtcggcggaggagcag
ctgcgcttcaagctggacaactcgatgggcggctcctcggaggtgatccaccgcaaggcc
atccagaggatatacggggacaaggcccacgacatcatcgacgggctcaagaagaacccg
gcggtgtcggtccccatcgtgctgaaaagattaaaaatgaaagaggaggagtggagagaa
gcccagagaggcttcaacaaaatctggcgggagcagaacgaaaagtattacctgaagtcg
ctcgaccaccaaggcatcaacttcaagcagaacgacaccaaagtgctgcgttccaagacc
ctcctcaacgagatcgagatgctgtacgacgaccgccaggagcgagcgtcggaggacgcc
accacgccgccgccgagcggcgcgcacatgacccagacctacgacgacagccaaatcctg
gaggacgccgccgccctcatcatccaccacgtcaagaggcaggtgggcatccagaaagaa
gacaagtacaagatcaagcagatcatccaccacttcatccccgacatgctgttcgcgcgg
cgcggcgagctctccgacgtcgaggaggacgaggacgaggaggaggaggacgaggaagac
acggacccggacccggacggacccaagaagcacaacggcctgccgggcggcagcccgtcc
aagtccaagctcctcttcggcaacgcggcggcgcagaagctgcgcggcggcggcgccgac
gacgcctacaacatgttcttcgtcaacaactactggtacatcttcctccgcctccaccac
atcctctgctcacgcctgctgcgcatctacggccaggccgagcggcagatcgaggtggac
gcccgcgagagggagtgggagagggaggtgctgggcctcaagagggagaagagcgagaac
ccggccatccagctgaagatgaaggagccgatggacgtcgacgtggaggactactactct
gtgtttctggagatggtgcgtaacctgttggacggcaacatggagccgactcagtacgag
gactccctgagggagatgttcaccatccacgcctacatcgccttcaccatggacaagctg
atccagagcatcgtccggcagctgcagcacctcgtcacggacgacgtgtgctcgcgggtc
accgacgtgtacctgagcgaaggcgccaacaaagccaccggcggctcgctgtccacgcag
acgtcccgggcgccggcggagggcgcctaccagcgcaaagtggagcagctgatgtcggac
gagaactgcttcaagttgatgttcgtgaagagccgaggagccgtcagtctgtccatggag
ctgctggacacggaggaggagaactccgacgagccggcggacgcagagaggtggtccgtc
tacgtgggccggtacctgaactccgactctgcgtccccggagctgcgcgagcacctgtcc
cagaagcccgtgttcctccccaggaacttgcggcgtatccggcggtgccagcgcggctgg
gagcgcctgcagcaggagaggatgaacaaggcgccttcggacgcgccgcgggactccgac
ggcgggctgaagatggagtgcatgttcaagctcaactcctacaagatggtgtacgtctgc
aagtcggaggactacatgtaccggcacacggcgctcacgcgggcccatcagtcccaacag
cgggtcaacacgcgcctgcacaggcgcttccacgcctggctggacgtctgggccggagag
cacgtgacggccgacatgtccgccgacagccgcgagtggctgatgggcgagaggcgagag
ggcctgctgccctgcagcaccacccgcagcccggaggtcctccactacatcggcgtgaac
aagtaccgggtgaagtacagaactctgtag
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