Cyclopterus lumpus (lumpfish): 117749465
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Entry
117749465 CDS
T09199
Symbol
smarcd3b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117749465 (smarcd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117749465 (smarcd3b)
03036 Chromosome and associated proteins [BR:
clum03036
]
117749465 (smarcd3b)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117749465 (smarcd3b)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117749465 (smarcd3b)
PBAF complex
117749465 (smarcd3b)
GBAF(ncBAF) complex
117749465 (smarcd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
117749465
NCBI-ProteinID:
XP_034415915
Ensembl:
ENSCLMG00005014373
LinkDB
All DBs
Position
20:complement(5828010..5849177)
Genome browser
AA seq
511 aa
AA seq
DB search
MATEETAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGSPAVRPGL
PSTVMEPSRKRPAPSQQGQQQQQQQQGVQSRSRKKPVGFPGANEMPARQMDMREPQSDPT
LGSNAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQ
QKRKLRLYISNTFNPARPDADDSDGSIASWELRVEGKLLDDPGKQKKKFSSFFKSLVIEL
DKELYGPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDPRLARL
LGIHTQTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNL
LLPPDPIVINHVISVDPNDQKKTACYDIDVEVEDPLKGQMSSFLLSTANQQEIASLDNKI
HETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERRAAFYNE
PWSQEAVSRYFYCKIQQRRQELEQALAVRNT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggctacggaggagacggcggggggagccaggaaagccaccaagagcaaactgtttgag
ttcctggtccatggagtgcgtcccggcatgccgtctggagcgaggatgccccaccaggga
gcgcccatgggcccccccggcccaccgtacggcgggagccccgcggtgcggcccggcctg
ccctccaccgtgatggagcccagccgcaagaggcccgccccctcgcagcagggccagcag
cagcagcagcagcagcagggggtccagagccggtccagaaagaagccagtcggattcccc
ggagccaatgagatgccggcgaggcagatggacatgagagagccccaatcagatcccacg
ctcggatcaaatgctaagagaaggaaaatggcagacaagattcttccgcaaaggatccgc
gagctggtcccggagtctcaggcctacatggatctgctggcgtttgagcgcaaactcgac
cagaccatcatgcgcaaacgcgtggacatccaggaagccctgaagagaccgatgaagcag
cagaagcgtaaactgaggctttacatatccaacaccttcaacccggcgagacccgacgcc
gacgactccgacggcagcattgcatcgtgggaactgcgagtggaggggaagttgctcgac
gacccggggaagcagaagaagaagttctcctcgttttttaagagcctggtgattgagctg
gacaaagaactctacggtcccgacaaccacctggttgagtggcaccgcacgcccaccact
caggagacggacggcttccaggtgaagaggccgggcgacgtgagcgtgcgctgcactctg
ctgctgatgctggactaccagcctccccagtttaaactggaccctcgcttggctcgcctg
cttggcattcacacccagactcgctcctgcatcatccaggccctctggcagtacgtcaag
accaacaagctgcaggactcccatgacaaggagtacatcaactgtgacaagtacttccag
cagatctttgactgccctcggctgaagttctctgagatccctcagcgcctcaccaacctc
ctcttaccccccgaccccatcgtcatcaaccacgtcatcagcgtggaccccaacgaccag
aagaagacggcctgctacgacatcgacgtggaggtggaggaccccctgaagggccagatg
agcagcttcctcctctccaccgccaaccagcaggagatcgcctccctggacaacaagatc
catgagaccatcgagtccatcaaccagctgaagatccagagggacttcatgctcagtttc
tccagagatcccaagggctacatccaggactggctcaaatcccagagccgagatcttaag
ttaatgacagacgtggtcgggaaccccgaagaggagaggagggcggcgttctacaacgag
ccctggtcccaggaggccgtcagccgctatttctactgcaagatccagcagaggagacag
gagctggaacaggccttagcggtgcgcaacacctaa
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