Cyclopterus lumpus (lumpfish): 117749565
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Entry
117749565 CDS
T09199
Symbol
spata13
Name
(RefSeq) spermatogenesis-associated protein 13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
117749565 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117749565 (spata13)
Membrane trafficking [BR:
clum04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
117749565 (spata13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_1
PH
SH3_9
SH3_2
Motif
Other DBs
NCBI-GeneID:
117749565
NCBI-ProteinID:
XP_034416085
Ensembl:
ENSCLMG00005022008
LinkDB
All DBs
Position
20:complement(8944599..8959414)
Genome browser
AA seq
1266 aa
AA seq
DB search
MSRAEQQDRVSSTSEDSLPGLHNSKADPLIRSRPLSDIYPFHSHADGSVAPCRPSGFGAQ
VQPVTAGHENRLNGINSSSWSNPVIGQPEGKPYSSRIMRLFSNSRKAPVPAHSSTTDGPT
STHSNDSVPQSWSGLSGLGVDSFKKLRSSVLQGIQSRGAVSQDGDHDPSDQEVANGTGVV
DIDRGLDDAENHLKFAGGYSVSNGNFDWQMLSGMSHCGSDIEDYDDEENDEGDGLTRNTR
ISRSIRRAYGPGRISLLDTGNRRIAGSGTNEATDSRKPDQTSSTNVQTKNMDENTNVTVL
SRLSKSAENLHIFKAPFRRKASSPGPLLLQEEAQRASTSNGTPNMKSPVMTKGPMLKLVG
SMTDLTVRRRRSPSPSPTSPSLLSPLTRLHDDYSRRVPCLTTSERQRRPSPVRARVMSLE
RSPLVHLQPEYSDSLQQHQVLISPVSVEPPEGTEQTSPGVPAHYEPLTEATTSGYKQTAQ
CDSAPLSQKEHPQQQDQTEVSVLPNECVCRGADTDQENQEETSDEQEPEALLQTEEVSPT
TSSTPPIVPPCLSESPTDASTETCAVKPRRRSGRSRPRPISDYGQLISRKHSIPEEVAEL
HAEERTANTSSHKDCSGSDACGNGESPENCSINVQGARHRPISVIGVVDLFSSDTEEKDD
HLPSLLSRPPIPSHQVPPYRAVSARFRPSALSQSTPIGLDCVGRRQLHRVLSVGVSECSA
TLDDSVSEEEEGSFDELTDTPPYLQPGVELSVLNEWISSGHTVYAEALWDHVTMEEQELA
FKAGDVIRVLDASHKDWWWARGADKEAWFPSSFVRVRVNQEDSSAESVESVADLEDPAPR
DTHSVQHKEQMRTNVVQEIMNTERIYIKHLKDICEGYIRQCRKHPDMFTELQLKTIFSNI
EDIYRFQRQFLKDLEKKYNKDQPHLSEIGSCFLLQGEGFSIYSNYCNTHPAACAELQRLM
KSRKYKHFFEACRLLQQMINISIASFLLTPVQKICKYPLQLGELLKYTPKDHSDYSGVSK
AYEAMKNVASLINERKRRLESFDTIAHWQVAILHWEGPDVLERSSELIHSGELTRVVRQG
KMQQRSFFLFDHQLVFCKKDVLRRDLLHYRGRLDMNQTEVVDVADGRDLDLGLTLRNALR
LRHASTLEFMCVLCCRKAQDKQRWLQAFAKERYRVKEDQEMGMEISEEQRKQAIVNARRA
KQKKSKNIGYSGSAPPHQQNLHPLHQRHITIPTSVPQQQVFSLAEPPKRKPYHLLYSITS
KAFFKK
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgagcagggcagaacaacaggacagggtctcgtccaccagcgaagactctctcccgggc
ctccacaactctaaagctgacccgctgatccgaagccgacccctcagtgacatataccca
ttccacagtcatgctgacggaagtgtagccccatgtcggccgtctgggtttggcgcccaa
gtacagccggtgactgcaggtcacgaaaaccgattgaatggcatcaactcctcctcctgg
tccaaccctgttataggtcaacctgagggaaagccttattcctcaagaattatgaggctt
ttttccaactcgaggaaggcgcctgtccccgctcacagttctaccactgatggtcccacc
tcaacccacagcaacgacagtgtcccccagtcctggtcaggactatccggactgggtgtg
gactccttcaaaaagctccgctcctctgtgctccagggtatacagagtagaggggcagtc
agccaagatggagaccatgacccatcagatcaggaagtggctaacggcacaggtgtggtc
gacattgaccgtggtctagatgatgcagaaaatcatttaaagtttgcaggcggatacagt
gtgtctaatggaaactttgattggcaaatgttgtcggggatgagccactgtggatcagat
attgaggactacgatgatgaggaaaatgatgaaggagatggtctcacgcgcaacacgcgg
atctcacgcagtatcaggagagcgtatggacccggacgcatctctttactggacacaggg
aataggaggatagcaggaagcggtacaaatgaagcgacggacagtcgaaaaccagatcag
acatccagcaccaacgtccaaacaaagaacatggatgagaacacaaatgtgacggtgctg
agcagactgagcaaaagtgcagaaaatcttcacatatttaaggcacctttcagacgcaaa
gcgtcgtccccaggacctcttttgcttcaggaggaagcccagagggctagcacgtcaaac
gggacgccaaacatgaagagccctgtgatgaccaaggggccgatgctaaagctagttggc
agcatgactgacctgactgtcagacgcaggcggagtccctccccgagccctacctctcca
tctctgttgtcacccctgacccgtctccatgacgactactcccgccgcgtgccttgcctc
acaaccagtgagcgacagcgccgaccctcgcctgtcagagcccgggtcatgtctctcgaa
cgcagccctctggttcatctacagcctgaatacagtgacagcctccagcagcaccaggtc
cttatcagcccggtttccgtggagcccccagagggaacagagcagacttcccctggtgtc
cctgctcattatgaaccactaactgaagccacaacaagtggttataaacagacagcacaa
tgcgattcagctcctcttagccagaaagaacatccccaacaacaagatcagactgaagta
agcgtgcttccaaatgagtgtgtatgtcggggagcggacacagatcaggaaaaccaagag
gaaacatcggatgaacaagagccagaagcacttctccaaacggaggaagtctctccaaca
accagcagcacccctcctattgtgcctccatgcctctcggagtcgcccaccgatgcatcc
acggaaacatgcgccgtcaagcccaggcgaaggagtggacgctcgagacctcgtcccatc
tctgactacgggcagctcatttccaggaagcactctattccagaggaagtggcagaactg
catgctgaagaaaggacagctaatacatcatcgcataaagactgcagtgggagtgacgca
tgtgggaatggagagagccctgagaactgcagcatcaacgttcaaggcgcgaggcatcga
ccgatctccgtgataggagttgttgatctgttctcctctgatactgaggagaaagacgac
caccttccttctcttttgtcgcggccgcccatcccctcccaccaggttcccccctacaga
gccgtgtctgccaggtttcgaccctccgccctctcccaaagcactcccatcggactggac
tgcgttggacggcgtcagctgcacagagtcctcagcgtcggtgtgtctgagtgctcggcg
acacttgatgacagcgtcagtgaagaggaggagggcagctttgatgagctcactgatacc
ccgccctaccttcagccaggggtggagctctctgtgctcaacgagtggataagctctggc
catacggtgtatgctgaggctctctgggaccatgtgaccatggaggagcaggagctagcc
ttcaaggctggagatgttatccgtgtcttggacgcctcacataaggactggtggtgggcc
aggggggctgacaaggaggcctggttcccttccagctttgtgagggtgcgagtgaaccag
gaggactcgagtgcagaaagtgtggagagtgtagcggacctggaagatccagctcccagg
gacacgcacagcgttcagcacaaggaacagatgagaaccaatgtggttcaggaaatcatg
aatactgaacgcatctacatcaagcacctaaaggacatctgtgagggttacatccgccag
tgccgtaaacacccggacatgttcactgagctgcagttgaagaccatcttcagcaacata
gaggacatctacaggttccagaggcagtttctcaaagacctggagaagaagtacaacaaa
gaccaaccacatctcagtgaaattggctcttgttttctcttgcagggagagggcttctct
atctactccaactattgtaacactcatccagcagcctgcgctgagctccagcgccttatg
aaatctagaaaatataagcatttctttgaggcctgccggctacttcagcagatgatcaac
atttccattgccagtttcttgctcacgcccgtccagaagatctgcaaataccccctgcag
ctaggagaactgctcaagtacacccccaaagaccacagtgactacagcggagtgagcaaa
gcgtatgaggcgatgaagaatgtggccagtttgataaatgagaggaagaggcggctggag
agcttcgacaccatcgctcactggcaggtggccattcttcactgggaggggccggatgta
ctggagcgcagctcagagctgatccattctggcgagctgactcgagtcgtccgacaaggc
aaaatgcaacagcgcagcttcttcctgttcgaccaccagttggtcttctgcaaaaaagac
gtcctgcgccgagacctgctccactaccgtggacggctggatatgaaccagaccgaggtt
gtggacgtggccgatgggcgggacctagacctgggcctgaccctgagaaatgctctgcgc
ctgcgccacgcctccactctggagtttatgtgtgtgctatgctgcaggaaggcccaggac
aagcagaggtggttacaggccttcgccaaggagagatacagagtcaaagaagaccaagag
atgggaatggaaatcagtgaagagcaaagaaaacaggccattgttaatgccagaagagcc
aaacagaagaagagcaaaaacattggttactctggttctgccccaccacaccagcaaaac
cttcacccacttcaccagcgtcacatcaccatcccaaccagcgtgcctcagcagcaggtg
ttttcactggccgagcccccaaaacgaaagccttatcacctgttgtacagcatcaccagc
aaagcctttttcaagaaatga
DBGET
integrated database retrieval system
