Cyclopterus lumpus (lumpfish): 117749660
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Entry
117749660 CDS
T09199
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04144
Endocytosis
clum04517
IgSF CAM signaling
clum04520
Adherens junction
clum04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117749660
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117749660
09144 Cellular community - eukaryotes
04520 Adherens junction
117749660
04530 Tight junction
117749660
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clum01009
]
117749660
Protein phosphatases and associated proteins [BR:
clum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117749660
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
Par3_HAL_N_term
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117749660
NCBI-ProteinID:
XP_034416232
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All DBs
Position
20:15464968..15774075
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AA seq
1437 aa
AA seq
DB search
MLGSPPLSLVFLLRGRSWAPRQLLFDLVVATTEDLSFVLAFARRGRSPSPWRGSFLVGIN
AAQGAMKVTVCFGRTGWSSRVEMGIYKSTASSRQAAMRYKKAIAKDPSYWVQVHRLEHGD
GGILDLDDMLCDVVDDKDRLVAVYEEQDPHNGGDGTSASSTGTQSPDPFASDMSSAPTFQ
PCQAPSEIEVNLFSLRSNMPLHVRRSSDPSLAGLPLGEVPVGPEEPSRKNPTRRSTTAGF
QKHNPKPNTSTGSLEQKGRGGHAYRSLPRDASGWTTQFQREMTRSSLSANHPMVDQWLDR
QEEEEEEERRRQERRIKRIEPVGRADSSLEYSHVFNLAGLLKPVEVSNGGGPLGIHVLPL
SSQDARTQGLLVKRLEHGGKAEQERLFQENDCIVKINQGDIRHLRFEQAQNIFKQAMRGT
VILFHVVPAAMKRQYELLMAQTELSPAQPNRVRFSQVSLQLGDSASLVGGAMPRSGPQPG
VNHDHQGPLAGSTPEPNRRYATLPHTLVARTSSVTSPSLQRRISTNLSASSYTKNKGRRF
NIQLKKGPEGLGFSITSRDVPIGGSAPIYVKNILPRGAAIQDGRLKAGDRLLEVSGVDLN
GKSQEEVVALLRATAMGGTVNLLVIRPEDSLLPREVHSEEEDMVLTPDGTQEFMTFEIPL
SDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLHGM
TNQDAMETLRTSMSVEGNKRGMIQLIVVRHVSKNNEEAPASPPVREHPVNSLLENHERRI
SNSVYETIEDVDSNSPSLANMIGRIGNFRLSPTVNMPQDDVVMIEDDRPPLLPAHLSDQS
SSSSHEDMGFVGDGPVSWVHELASQNECSLSPDADADPDDSFQREGFGRQSVSEKRTKQY
ENAAELEIVKTRKSKSMDLGVAEQILGPSLGMKKSSSLESLQTAVAEETLNGEINAKRAR
SRIARGRGCNESFRAAIDKSYEKPAVPAAEEENSAETLDEDTEGSSRSGHESMSTSGDLT
AGPGLNGTPYKDDRQRDQDRVGGKEKKKAERDKEREKDKSKAKKGVLKGLGEMFRFGKHR
KDERPGDRMERKGSSKSKAEDMQASEEETMRMRLEQERIQAKMRELREKQAKEREYAEIQ
DVVSGAFSSDEEHTYAGIGSLDSSVDSSSMEPYNHHYHLTQSPQSPHLPLSRQDNGPPLE
PLYAQVNKPRNGRPAAPDSSHMAPSNHDRIQMLRSEFQQARQEDDVEDHRHTYQSWVSNG
TETPSGRHSVTVEAQQPEDRDGFQQAQRQYNSLPRQPRKYPSTASQDSWDKVDMPAEGFQ
TPKENPRYSGSHGSRNGYLATSGFNARVLLETQELLRQEQRRREQQASKTRPPPMPETPG
GGAYDHGRDHAQAPGPAPVMAPPQSKGPYRQDVPPSPSQLAKLSRLQGSEKGRLFYS
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgctgggctctccacccctctccctcgtcttcctcctccgaggacgcagctgggcaccg
agacaacttctcttcgacctcgtcgtcgcaaccaccgaggatttgagttttgttttggcc
ttcgctcgccggggacggtccccgtcgccctggcgcggctctttcctcgttgggattaac
gcggcgcagggtgccatgaaagtgacggtgtgcttcgggaggaccgggtggtcgtcccgt
gtggagatgggaatatacaagtccacagcctcatcgaggcaggcggccatgaggtacaag
aaggcgatcgcgaaggaccccagctactgggtccaggtccacaggttggaacatggagat
ggaggcattttggacctggatgacatgctgtgcgatgtggtggacgacaaagacaggctg
gtagcagtatatgaagagcaggatcctcacaatggaggtgacggtaccagtgccagctcc
accggtacgcagagtccggatcccttcgccagtgacatgagttcagcaccgacctttcag
ccctgccaggcacccagtgagatcgaggtcaacctgttctcactgcgatccaacatgcct
ctccatgtgcgtcgcagcagtgatccctccttggccggccttcctctgggcgaagtcccg
gtcggtccagaggaaccttccagaaagaacccaactcgccggtccacaacggctggcttc
caaaagcacaaccccaaaccaaacacaagcacgggcagcctggaacaaaagggtagagga
ggccacgcctatcggagtcttcctcgtgacgcgagtggctggaccactcagttccagaga
gaaatgactcgatcgtccctgagcgccaaccatccgatggtggaccaatggctggacaga
caggaagaggaggaggaggaagagcgaaggagacaggaaaggaggatcaaaaggatagag
ccagtagggagggccgattcctcattggaatattcgcatgtgttcaatctagcaggcctg
ctcaagccggtcgaggtgtccaacggaggagggcccctggggatccacgtattgcccctc
agttcacaggatgccaggactcagggcttgctggtgaagcgtctggagcatggggggaaa
gccgagcaggagcgtctcttccaggagaacgactgcattgtcaaaattaatcagggagac
attcgccacctgcgcttcgaacaagcccagaacattttcaagcaggcgatgcgtggcacg
gtcatcctcttccacgtggtcccggcagccatgaagaggcagtacgagctgctgatggcc
cagaccgagctcagcccggcccagcccaacagagtccgcttcagccaagtctccctgcag
ttgggggatagtgccagcctggtggggggggcgatgcccagatctggaccacaaccaggc
gtcaaccacgaccaccagggacccctggcaggaagcacccccgagccgaaccgacggtac
gccaccttaccccacaccttggtcgccaggacctcttcagtcacctccccctccctgcag
cgcaggataagcacaaacctgtccgccagctcctacacaaagaacaaaggacgcagattc
aacatccagctgaagaaaggtccagagggtctcgggttcagcatcacatccagagacgta
ccaatcggtggcagtgctcccatttatgtcaaaaacatccttcctcgaggggccgccatc
caagatggccgattgaaagctggagaccggctgttggaggtcagtggagtggacctgaat
ggcaagagccaggaggaggtggtggccctgctccgagccacggccatgggcgggactgtg
aacctgttggtgatccggcctgaggactcgctgctgccccgagaagtgcattcagaggaa
gaggacatggtgttaaccccagacggtacacaagagttcatgacctttgagatccctctg
agtgactcaggctcggcaggcctgggggtcagcgtcaagggtaaccggtccaaggagaac
cacgcggacttgggcatctttgtgaaatccattattaatggaggggctgctagcaaggat
ggccgtctacgggtcaacgaccagctaattgcagtcaacggggagtcactgcatgggatg
accaaccaggacgccatggagacactgcgcacatccatgtccgtcgagggcaacaagcgg
ggaatgattcagctcatcgtggtccggcacgtgtccaaaaacaatgaggaagcccctgcc
agccctccggttcgtgagcatcctgtgaactctctactggaaaaccacgagcgccgcatt
tccaactctgtgtatgagaccattgaagacgtggacagcaactccccgtcgctagctaat
atgatcggacgcattggtaacttccggctctctccgacggtgaacatgcctcaggatgac
gttgtgatgatcgaagacgataggccgcccctgcttcctgcccatctctccgaccaatcg
tcctccagttcccatgaggacatgggctttgtgggagacggcccggtgtcctgggtccac
gagctggccagtcagaatgaatgctcgctcagcccagacgcagacgccgaccctgacgac
tcgttccagagggagggcttcggccgccagagcgtgtcggagaaacgcaccaaacagtat
gaaaatgcagctgagctggagatcgtcaagacgcgcaagtccaagagcatggatctgggt
gtcgcagaacaaatccttggaccctcgctgggcatgaaaaagtccagctctcttgaaagc
ctccagacggccgttgccgaggagacgctgaacggcgagatcaacgctaaaagggcgcgc
tcgcggatcgccaggggccgcggctgcaatgagagcttccgggctgcaatcgacaaatca
tacgagaaacctgccgtcccagcggcagaagaggagaacagcgcagagacattggacgag
gacaccgagggaagttccagatcgggccacgagtcaatgtccaccagcggcgacctcact
gcgggacccgggctgaacggcaccccctacaaagatgacaggcagagggatcaggacagg
gttgggggaaaggagaagaagaaagccgaaagggacaaagagagggagaaggacaagagc
aaagccaagaaaggcgtgctgaagggcctgggcgagatgttcaggttcggaaagcaccgg
aaggatgagcggccgggagacaggatggagaggaagggctccagtaaatctaaagctgag
gacatgcaggcgtcagaggaggagaccatgcgaatgaggctggagcaagagagaatacag
gccaagatgcgggagcttcgggagaagcaggcaaaggagagggaatatgccgagatccaa
gatgttgtcagcggtgccttcagctcagatgaggagcacacctatgccggcatcggatcg
ttggactcgtcggtggacagcagcagcatggagccctacaaccaccactaccatctcacc
cagagtccccagagtcctcaccttcccttgagccgacaggacaacggtccaccactggag
cccctgtatgcccaggtcaacaagccacgcaacggacgcccggcagctccagacagcagt
cacatggctcccagtaaccacgaccggatacaaatgctgaggagcgagttccagcaggcc
aggcaggaggacgacgtggaggaccacaggcacacctaccagtcctgggtgagcaacggg
acggagacgccaagcggccgccattcggtaacagttgaggctcagcagccagaggacaga
gatggtttccaacaagcacaaaggcagtacaactccctgccacggcaacctcgaaagtac
cccagcacggcgtcccaggactcgtgggacaaggtggacatgccagcagagggattccag
acacccaaggagaacccccgctactccggcagccatggatcacgtaacggctacctggcg
acgtccggcttcaacgcccgtgtcctgttggagacccaggagctgctgaggcaggagcag
aggcgcagagagcagcaggccagcaagaccaggccgcctcccatgccggagacccccggc
ggcggcgcctacgaccacggcagagaccacgctcaggccccaggccccgccccggtgatg
gccccacctcagtccaagggcccctacagacaggacgtacccccgtcgccctctcagctc
gccaagctcagcaggctccagggttcagagaaagggaggcttttttactcctga
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